Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40870 820 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 804 / 0 UKL2 uridine kinase-like 2 (.1) AT4G26510 706 / 0 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 702 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27440 658 / 0 UKL5 uridine kinase-like 5 (.1) AT1G73980 92 / 2e-19 Phosphoribulokinase / Uridine kinase family (.1) AT1G26190 84 / 8e-17 Phosphoribulokinase / Uridine kinase family (.1) AT3G53900 76 / 2e-15 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT1G32060 71 / 5e-13 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069600 [exp] 873 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.011G165100 [exp] 720 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.001G467800 [exp] 719 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.017G071200 [exp] 648 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.015G055400 [exp] 87 / 4e-18 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 85 / 2e-17 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 84 / 4e-17 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.006G091000 [exp] 82 / 4e-17 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.001G134000 [exp] 72 / 1e-13 AT1G32060 699 / 0.0 phosphoribulokinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041569 [exp] 827 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 822 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 681 / 0 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 647 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 645 / 0 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10022289 [exp] 560 / 0 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10030570 [exp] 87 / 5e-18 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 87 / 8e-18 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009040 [exp] 87 / 8e-18 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 86 / 1e-17 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13238 [poplar] [flax] AAA_18 AAA domain CL0533 [poplar] [flax] PRTase-like PF14681 [poplar] [flax] UPRTase Uracil phosphoribosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G332100.1 pacid=42789254 polypeptide=Potri.001G332100.1.p locus=Potri.001G332100 ID=Potri.001G332100.1.v4.1 annot-version=v4.1 ATGCCGGAAGAGACCAATTCCATAGACTACGTAATGGAGAAGGCCTCAGGTCCTCACTTCTCCGGCCTCCGTCTCGACGGTCTTCTCTCTTCTCCTCCTT CCTCCACTGCTTCTCCCTCTCACTGCTCCGCCACCGCCAGCTCTTCAGCCTTGTCCGACTCCAACGCTCCCAATCAACCTTTCGTCATTGGAGTTTCTGG TGGTACGGCATCGGGCAAGACTACAGTATGTGATATGATCATTCAACAGCTTCATGATCATCGTGTTGTTCTTGTTAATCAGGATTCATTTTATCGTGGT TTGACGCCTGAAGAATCGAAGCGAGTGCATGAGTATAATTTTGATCATCCTGATGCTTTTGATACCGAGCAACTTTTAGACTGTATTCAAAAGCTGAGAG GTGGACAATCTTATCAAGTTCCTATCTATGATTTTAAGAATCATCGCAGAAGTTCGGAGAGCTTCAGGCAGGTAAATGCTTCTGATGTGATTATCCTAGA GGGGATTCTGGTTTTCCATGACCAGCGCGTCCGCAACCTGATGAACATGAAAATTTTTGTTGATACAGATGCTGATGTCAGGCTTGCTCGTAGAATAAGG CGTGACACAGTTGAGAGGGGGAGGGACATAAACTCTGTTCTTGAACAGTATGCTAAATTTGTGAAGCCTGCTTTTGATGATTTTGTGTTGCCATCAAAGA AGTATGCTGATGTGATCATCCCACGGGGGGGCGACAATCATGTTGCCATTGATTTAATTGTGCAACATATCCACACAAAGTTAGGTCAACATGATCTGTG CAAAATATATCCAAATGTGCATGTTATTCAGTCAACTTTTCAGATAAGAGGTATGCATACACTGATTCGAGACAAGGAGATATCGAAGCATGATTTTGTA TTTTATTCAGACCGACTTATCCGTCTGGTTGTGGAACATGGTTTGGGCCATCTGCCATTCACCGAGAAGCAAGTAGTGACGCCAACAGGATCTGTTTACA CTGGGGTTGACTTTTGCAAGAAATTATGTGGGGTCTCTATTGTCCGAAGTGGAGAAAGCATGGAAAATGCACTGCGAGCATGTTGCAAAGGAATAAAAAT CGGAAAAATTCTCATCCACCGTGATGGAGACAATGGAAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAACGGCATGTCCTGCTTCTAGAT CCTGTTCTTGCTACAGGTAACTCTGCAAACCAAGCGATAGAACTTCTCATACAGAAAGGAGTTCCAGAATCCCACATTATATTCCTAAACCTAATCTCTG CTCCTGAGGGTATCCATTGTGTTTGCAAAAGATTCCCATCCTTGAAAATCGTCACTTCGGAGATTGATGTTGCGTTGAATGAGGAGTTTCGTGTCATACC AGGCATGGGTGAGTTTGGCGACCGGTACTTTGGCACTGATGATTAG
AA sequence Show only first row Show all	>Potri.001G332100.1 pacid=42789254 polypeptide=Potri.001G332100.1.p locus=Potri.001G332100 ID=Potri.001G332100.1.v4.1 annot-version=v4.1 MPEETNSIDYVMEKASGPHFSGLRLDGLLSSPPSSTASPSHCSATASSSALSDSNAPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRG LTPEESKRVHEYNFDHPDAFDTEQLLDCIQKLRGGQSYQVPIYDFKNHRRSSESFRQVNASDVIILEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIR RDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVHVIQSTFQIRGMHTLIRDKEISKHDFV FYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLD PVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGMGEFGDRYFGTDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.001G332100 [exp]	0	1
AT3G19660			unknown protein		Potri.004G105900 [exp]	2.00	0.8964
AT1G03670			ankyrin repeat family protein ...		Potri.019G101700 [exp]	2.44	0.9077
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G147000 [exp]	6.63	0.7871
AT1G67910			unknown protein		Potri.008G186200 [exp]	7.07	0.7802
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	13.85	0.8861
AT4G38670			Pathogenesis-related thaumatin...		Potri.009G132200 [exp]	15.81	0.8144
AT3G03773			HSP20-like chaperones superfam...		Potri.013G062600 [exp]	19.20	0.7271
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.001G141400 [exp]	19.59	0.8149
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Potri.002G186400 [exp]	22.75	0.7970	IAA4.1
AT4G13800			Protein of unknown function (D...		Potri.001G318700 [exp]	25.37	0.8103

Compare expression of checked genes

Potri.001G332100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.