Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01860 96 / 4e-24 unknown protein AT5G40860 79 / 1e-17 unknown protein AT3G27210 77 / 7e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058700 [exp] 120 / 2e-33 AT3G01860 83 / 4e-19 unknown protein Potri.008G176300 [exp] 113 / 2e-30 AT3G01860 67 / 2e-13 unknown protein Potri.012G096050 [exp] 53 / 5e-08 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041572 [exp] 252 / 8e-85 AT3G01860 77 / 1e-16 unknown protein Lus10022348 [exp] 120 / 2e-33 ND / Lus10035217 [exp] 118 / 7e-33 AT3G27210 79 / 3e-18 unknown protein Lus10032051 [exp] 120 / 3e-31 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10034680 [exp] 44 / 3e-05 AT3G27210 42 / 1e-04 unknown protein Lus10011366 [exp] 44 / 4e-05 AT3G27210 39 / 0.001 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G332500.2 pacid=42792201 polypeptide=Potri.001G332500.2.p locus=Potri.001G332500 ID=Potri.001G332500.2.v4.1 annot-version=v4.1 ATGGGTTCTTGTGCTTCAGTTCATAACGCTACTGCACCGGAGTCAGCCATGAAACTAGGAGTGTCATTTAGCTCTAAAAAAGACAAGCTTGTGATTCCAA AGTCACCAATCAATGATAATAAACAGTCCACTGCAAACCCTCTAATCAAGACTTTTGGAGATTTTGGTAGTAAAGAAGAAACATTTTTTGATTCTCGAGC CTGGTTAGACTCGGACTGTGAAGATGATTTCTACAGTGTGAATGGAGATTTTACTCCTTCCCGTGGCAATACCCCAGTCCACCATAATTTCTCTGCTGGG ACCCCGCAAGCCAACAAAAACCCTTTGGAGGGCAGGCCTCCTGGTTCTGAACTCGAACCATCTCCAACTGGGAAGAAGAGATTATCTGAACTTTTCAAAG ATAGGATTAGAGAAGACCGAGATGTAGATGACCTACAAACTTCAGGCTCAGGCGACCAAAACATTGCCAATGGGAAGATGGAAGTCAAGCAAACCATACT CGACGTCCTTCCCAAATCTGCCAATGCTACCCCCTATCTCTCTGGAACTAATTCTGTCTGTAGTAGTGAAAGGACTGCTAATGGAGATGCCCTAATTGAG AAGGAGAAATCATTTAAATCTAGTCCATGTTGCATCCCGAGCTTGATTTTTTGCCGTAGTTTTAGTGAAAGAAAGAAGAAAAGCCAAGCCATAGCTGTAT GA
AA sequence Show only first row Show all	>Potri.001G332500.2 pacid=42792201 polypeptide=Potri.001G332500.2.p locus=Potri.001G332500 ID=Potri.001G332500.2.v4.1 annot-version=v4.1 MGSCASVHNATAPESAMKLGVSFSSKKDKLVIPKSPINDNKQSTANPLIKTFGDFGSKEETFFDSRAWLDSDCEDDFYSVNGDFTPSRGNTPVHHNFSAG TPQANKNPLEGRPPGSELEPSPTGKKRLSELFKDRIREDRDVDDLQTSGSGDQNIANGKMEVKQTILDVLPKSANATPYLSGTNSVCSSERTANGDALIE KEKSFKSSPCCIPSLIFCRSFSERKKKSQAIAV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01860			unknown protein		Potri.001G332500 [exp]	0	1
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	2.23	0.8592
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.002G221500 [exp]	3.46	0.8263
AT1G34770			unknown protein		Potri.005G164300 [exp]	4.47	0.8118
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.002G094200 [exp]	13.19	0.8097	DREB19
					Potri.007G065250 [exp]	14.49	0.7892
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	14.96	0.7836
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.001G213800 [exp]	19.07	0.8189	RHF2.3
AT1G14740			Protein of unknown function (D...		Potri.008G138100 [exp]	20.49	0.7986
AT1G70000	MYB		myb-like transcription factor ...		Potri.015G069000 [exp]	21.23	0.7725
AT1G80290			Nucleotide-diphospho-sugar tra...		Potri.006G278400 [exp]	21.63	0.7733

Compare expression of checked genes

Potri.001G332500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.