Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01850 387 / 2e-138 Aldolase-type TIM barrel family protein (.1.2) AT1G63290 375 / 8e-134 Aldolase-type TIM barrel family protein (.1) AT5G61410 161 / 9e-49 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062100 [exp] 162 / 6e-49 AT5G61410 494 / 4e-179 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035219 [exp] 387 / 6e-136 AT3G01850 372 / 6e-130 Aldolase-type TIM barrel family protein (.1.2) Lus10032052 [exp] 374 / 2e-132 AT1G63290 362 / 4e-128 Aldolase-type TIM barrel family protein (.1) Lus10001653 [exp] 167 / 5e-51 AT5G61410 476 / 6e-172 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10021627 [exp] 164 / 2e-49 AT5G61410 452 / 2e-162 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10015715 [exp] 159 / 7e-48 AT5G61410 457 / 4e-164 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019083 [exp] 90 / 1e-21 AT5G61410 265 / 3e-89 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019082 [exp] 62 / 9e-13 AT5G61410 136 / 4e-41 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00834 [poplar] [flax] Ribul_P_3_epim Ribulose-phosphate 3 epimerase family
Representative CDS sequence Show only first row Show all	>Potri.001G332700.1 pacid=42790595 polypeptide=Potri.001G332700.1.p locus=Potri.001G332700 ID=Potri.001G332700.1.v4.1 annot-version=v4.1 ATGGGTGTGGCAGCAAAAATCGCACCGTCGATGTTATCATCGGATTTCGCCAATTTGGCATCGGAAGCTCAGCGAATGCTCGATTGCGGCGCCGATTGGC TTCACATGGACATCATGGATGGGCACTTTGTCCCTAACCTAACAATTGGTGCTCCAGTCATTGAGAGTTTGAGAAAACACACAAAGGCATATTTGGATTG TCACCTTATGGTCACGAATCCTCTTGATTATGTGGAGCCTTTGGGCAAAGCTGGCGCTTCAGGATTCACGTTTCATGTTGAGGTATCCAGAGATAATTGG GGAGATCTTGTCCAGAGAATCAAATCAAAGGGCATGAGGCCTGGTGTATCATTAAAACCCGGTACGCCGATTGAAGAAGTTTATCCTTTGGTTGAAGGTG AAAATCCTGTGGAAATGGTCCTTGTTATGACTGTAGAACCTGGATTTGGTGGACAGAAGTTCATGCCAGAAACGATGGATAAGGTACGGACTCTAAGGAA GAAGTATCCATCACTTGATATAGAGGTAGATGGTGGTTTAGGGCCTTCAACAATTGACATGGCAGCTTCAGCTGGAGCAAACTGCATTGTGGCAGGAAGT TCAGTGTTTGGAGCTCCTGATTCAGCCCAAGTAATATCTCTCCTGAGAAAGAGTGTTGAGGAAGTTCAGAAAAACAACTGA
AA sequence Show only first row Show all	>Potri.001G332700.1 pacid=42790595 polypeptide=Potri.001G332700.1.p locus=Potri.001G332700 ID=Potri.001G332700.1.v4.1 annot-version=v4.1 MGVAAKIAPSMLSSDFANLASEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEVSRDNW GDLVQRIKSKGMRPGVSLKPGTPIEEVYPLVEGENPVEMVLVMTVEPGFGGQKFMPETMDKVRTLRKKYPSLDIEVDGGLGPSTIDMAASAGANCIVAGS SVFGAPDSAQVISLLRKSVEEVQKNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01850			Aldolase-type TIM barrel famil...		Potri.001G332700 [exp]	0	1
AT5G02780		GSTL1	glutathione transferase lambda...		Potri.010G214800 [exp]	4.47	0.8464
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.002G168900 [exp]	5.65	0.8288
AT3G51610		NPU	NO PRIMEXINE AND PLASMA MEMBRA...		Potri.016G134700 [exp]	8.12	0.8195
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G082700 [exp]	8.24	0.8541
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Potri.013G095300 [exp]	9.21	0.8130
AT3G59390			unknown protein		Potri.019G051300 [exp]	9.48	0.8138
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.012G043900 [exp]	18.02	0.8174	NCPGS.6
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.005G209800 [exp]	21.02	0.7889
AT1G19310			RING/U-box superfamily protein...		Potri.002G133000 [exp]	22.64	0.8039
					Potri.002G120500 [exp]	23.62	0.7936

Compare expression of checked genes

Potri.001G332700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.