Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01840 471 / 2e-158 Protein kinase superfamily protein (.1) AT2G33580 247 / 2e-72 Protein kinase superfamily protein (.1) AT2G23770 221 / 3e-63 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 181 / 1e-48 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT4G22130 169 / 4e-45 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT2G28250 167 / 3e-44 NCRK Protein kinase superfamily protein (.1.2) AT1G51940 164 / 6e-43 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G09440 157 / 1e-41 Protein kinase superfamily protein (.1) AT4G02010 160 / 4e-41 Protein kinase superfamily protein (.1) AT3G59110 154 / 4e-40 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032100 [exp] 257 / 8e-76 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 252 / 9e-75 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 251 / 2e-74 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 233 / 2e-67 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 228 / 8e-66 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 219 / 1e-62 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 201 / 1e-55 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.009G010300 [exp] 196 / 7e-54 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128401 [exp] 179 / 3e-51 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022345 [exp] 582 / 0 AT3G01840 429 / 1e-141 Protein kinase superfamily protein (.1) Lus10041574 [exp] 477 / 1e-160 AT3G01840 383 / 1e-124 Protein kinase superfamily protein (.1) Lus10022488 [exp] 251 / 5e-74 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 235 / 4e-68 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016793 [exp] 231 / 8e-67 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022487 [exp] 230 / 8e-64 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032735 [exp] 204 / 2e-56 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10018788 [exp] 189 / 2e-51 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10030022 [exp] 178 / 6e-48 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10008586 [exp] 179 / 1e-47 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G332800.1 pacid=42790614 polypeptide=Potri.001G332800.1.p locus=Potri.001G332800 ID=Potri.001G332800.1.v4.1 annot-version=v4.1 ATGGGCATGGTTCCACTTATCAGTAAGCTCTACTTTGGAGCTTTCGCCTTTATATTAATCTGTTTACTTGTCTCTGCACTTGGACAGAACTTGTTGAGCT GCCAGACAACATCTCCAGATGCTTCTGGCTACCATTGTAACAGTAACGGATTGCAGGATCAGTGCAAGACATTTGCTATTCTTCACACTAGCTCATACTT CTCATCTCTTTCCAACTTAAGCTTTTATTTGGGCTTAGATCGGTTTGTGATCGCGGCAACAAACGGCTTTTCTGCCAACACTGAGTTTCTGCCGAAAGAT CAGCCTTTGCTGATACCGATTGACTGCAAATGCAATGGTGGCTTCTTTCAGGCTCTTGTGACGAAAACTACCATCAAAGGGGAGAGTTTTTACAGCATTT CTAAGTCACTGGAGGGACTAACAACCTGCAAAGCCATTCGAGAGAAGAACCCAGGTATCTCACCGGAGAATCTAAATGGTAAAGTTCAGTTACAGGTACC CTTGAGATGTGCTTGTCCATCCTCTACTGAAGTCATTCTAGCAACTAGACTATTGCTTTCTTATCCGGTAAGTGCTGGCGACACAATCTCGAACCTTGCT ATTAAGTTCAATACTACTCCAGAAGCTATTACATCCGCAAATAACAGATCATTGACAACCTTTAAACCCACAAGCCTTGTACCTCTTACATCTCTTTTGA TACCACTAGGTGGCAAGCCTACCCTCGGTCCCCTTGCAAAACCTAATGAACCCAATTTGCATATTCCTGCAAGTAGCCTTCCAGTGATCAATCCACATAA GAAAAGGTCCAAGATGTGGAGGATTGGTGTTTATATTGCTGTTACTGGAGCTGTAGTTGGAGTAAGCATTGCTATTGCAGCAGCTTTCTTGGTGATCCAA TTGAAGAAGAAGAAGCAAGTTTTAAGCAAGGAGGCAGATACGGAGCTTCAGCAGCTTAGTTTAAGTGTAAGAACTACAAGTGACAAGAAAGTCTCATTCG ATGACTCACAAAATCATTTTGATAGTCAGATCACTGACACCACACCCGGTAAGGTGTTTGTGGAGACTTACACTGTAGAGGAGCTCAAAAGAGCAACCGA GGACTTCAATTCAAGCAATCAAATCGAAGGTTCTGTGTATCATGGTCGTCTCAATGGGAAGAACTTGGCAATAAAGCGCGTGCAACCAGAAACTATTTCA AAAGTTGAGCTTGGGCTTTTTCAAGATGCAACTCACCATCATCCAAACATAATCAGAGTGGTGGGAACATGTTTGAGTGAAGGTCCTGATTCATTTTTGG TTTTTGAGTACGCTAAAAATGGATCTTTGAAGGATTGGCTTCATGGGGGACTGGCCATGAAGAACCAATTCATTGCCTCCTGCTACTGTTTCCTAACGTG GAATCAGAGGCTGAAGATATGTCTTGATGTAGCAGTGGCCCTACAATATATGCACCATATCATGCACCCTAGCTATGTTCATAGAAACATCAAGAGCCGG AACATCTTCCTCGATGAAGAATTCAATGCGAAGATAGGAAATTTCGGCATGGCAGGGTGTGTTGAAGATGATACCAAGGAGCCAGACTTTAATTCAACCA ACCCTGCCTCCTGGAGCCTTGGATACTTGGCTCCTGAGGCTCATCAAGGTGTAGTTTCCTCTAGCACAGATATATTTTCTTTTGGGGTGGTTCTGATGGA GGTTCTATCTGGACAAACACCGATAACAAGGCCTAACGACAACGGAGAAGGGAGCATTTGGCTGTCGAAGAAAATCAAGTCCATTTTGCTATCAGAAAAT GCGGATGAGCTGAGAGAATGGATTGACAGTGCAATGGGGGAGAATTACTCATTTGATGAGGCTGCCACTTTGGCCAATATTGCACGAGCTTGCACAGAAG AAGACCCTTCTTTGAGACCAACTTCTGGTGAAATCGTTGAAAAGCTGTTGAGATTGGTGGAAGAATCCACAGAAGGAGAGCAGATACTAATCTGTGAAAG CTCTTGCAAACCTCTAGTCAAGTCAACTGCAACAAGTGTTTAA
AA sequence Show only first row Show all	>Potri.001G332800.1 pacid=42790614 polypeptide=Potri.001G332800.1.p locus=Potri.001G332800 ID=Potri.001G332800.1.v4.1 annot-version=v4.1 MGMVPLISKLYFGAFAFILICLLVSALGQNLLSCQTTSPDASGYHCNSNGLQDQCKTFAILHTSSYFSSLSNLSFYLGLDRFVIAATNGFSANTEFLPKD QPLLIPIDCKCNGGFFQALVTKTTIKGESFYSISKSLEGLTTCKAIREKNPGISPENLNGKVQLQVPLRCACPSSTEVILATRLLLSYPVSAGDTISNLA IKFNTTPEAITSANNRSLTTFKPTSLVPLTSLLIPLGGKPTLGPLAKPNEPNLHIPASSLPVINPHKKRSKMWRIGVYIAVTGAVVGVSIAIAAAFLVIQ LKKKKQVLSKEADTELQQLSLSVRTTSDKKVSFDDSQNHFDSQITDTTPGKVFVETYTVEELKRATEDFNSSNQIEGSVYHGRLNGKNLAIKRVQPETIS KVELGLFQDATHHHPNIIRVVGTCLSEGPDSFLVFEYAKNGSLKDWLHGGLAMKNQFIASCYCFLTWNQRLKICLDVAVALQYMHHIMHPSYVHRNIKSR NIFLDEEFNAKIGNFGMAGCVEDDTKEPDFNSTNPASWSLGYLAPEAHQGVVSSSTDIFSFGVVLMEVLSGQTPITRPNDNGEGSIWLSKKIKSILLSEN ADELREWIDSAMGENYSFDEAATLANIARACTEEDPSLRPTSGEIVEKLLRLVEESTEGEQILICESSCKPLVKSTATSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01840			Protein kinase superfamily pro...		Potri.001G332800 [exp]	0	1
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.004G004700 [exp]	4.89	0.6756	STM.2
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	7.74	0.6729
AT1G01490			Heavy metal transport/detoxifi...		Potri.014G089700 [exp]	9.00	0.6864
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	15.23	0.6673
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	19.07	0.6140
AT5G59020			Protein of unknown function (D...		Potri.009G039300 [exp]	19.28	0.6186
AT4G28100			unknown protein		Potri.013G148700 [exp]	21.90	0.6428
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.009G115200 [exp]	22.20	0.6108
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.001G358500 [exp]	28.91	0.6101	Pt-ARF6.3
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	30.04	0.6371

Compare expression of checked genes

Potri.001G332800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.