Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50160 237 / 1e-72 Plant protein of unknown function (DUF247) (.1) AT3G50120 234 / 3e-71 Plant protein of unknown function (DUF247) (.1) AT3G50150 228 / 3e-69 Plant protein of unknown function (DUF247) (.1) AT3G50170 224 / 3e-67 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 215 / 5e-64 Plant protein of unknown function (DUF247) (.1) AT2G36430 210 / 4e-63 Plant protein of unknown function (DUF247) (.1) AT3G50180 211 / 6e-62 Plant protein of unknown function (DUF247) (.1) AT4G31980 212 / 9e-62 unknown protein AT3G50130 201 / 2e-58 Plant protein of unknown function (DUF247) (.1) AT3G50190 199 / 2e-58 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187100 [exp] 236 / 8e-73 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 226 / 2e-69 AT4G31980 317 / 1e-101 unknown protein Potri.003G181600 [exp] 224 / 1e-68 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 220 / 5e-67 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.003G206801 [exp] 219 / 8e-67 AT4G31980 261 / 3e-80 unknown protein Potri.005G116100 [exp] 219 / 2e-66 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 219 / 4e-66 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 218 / 8e-66 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 216 / 2e-65 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 234 / 2e-72 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 221 / 2e-67 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 221 / 9e-67 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 219 / 4e-66 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 211 / 9e-63 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 204 / 9e-61 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 204 / 9e-61 AT4G31980 251 / 5e-76 unknown protein Lus10004516 [exp] 202 / 7e-60 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 192 / 3e-56 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 187 / 1e-54 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.001G333000.1 pacid=42792521 polypeptide=Potri.001G333000.1.p locus=Potri.001G333000 ID=Potri.001G333000.1.v4.1 annot-version=v4.1 ATGGCAAGATCCGAAAGGGATGGTGGTACAAGGAGTGCTGATATATGCGGTCCTTCTCATGGAGTAGATGATCAGGTCACAGTTGATATTGATTCATTGA CCTCTTCCGTTGAAAGTATGATGTCCCAGAATTTGATAATGCCTGATAAAGTATGCATCTTTAAAGTGCCCCACATTCTCCGAAGGCATAGCGAAAAAGC TTATACCCCCAACGCATTTTCAATTGGCCCCTGGCACCGTCACCATCCACTGATGAAATCTACAGAGAAAATTAAACTGAAGTATCTCAAAGGCCTTCTC TGCCAAAGATCTGCGAGCATAACACTGAAGGGGTTGATCAAATCCACCAGGGTGATCGAGAAAGAGGCACGTTCGTGTTATGCTGGACCAATTGATGTCG GTGTAGAGGATTTTGTCAGAATGTTGGTGATAGATGGTTGCTTTCTTATTGAACTATTTAGAAAGGATCACGATCACGAGAATCATCCTAGAGAAGATGA TGATCCTATCTTCAATATGTCTTGCATGAAGCAGTACCTATATCATGACTTGATTTTGGTAGAAAACCAAATACCTTGGTTGGTCCTTGAAAACTTGTTC AACATGACCGCGGATCCTGAAAACACGACAACCCTCGCACAACTTGCCCTTAAATTCTTTGACAACATTTTTTCATTTCATCCACCCCGCAAACTTCCCT CTTACCAGGGACAAAAACATTTGCTCGACCTCTTAAGAAATTGGTTAGTTTTGTCATCTGGAAAAGAGGAAAATGGTGAAACCGGATGGGAACCTATTCC TTCCGTCACAAATCTTGTAGACGCCGGAATTAAATTGAAGGCGGGTGAGTCAAGCAGCATCTTGGATATAAAATTCGAAAATGGTGTCCTGGAAATCCCT CCATTGCTAATTCAGGAGACAACTGAAGTCATCATTCGAAACCTCATCAGCTATGAGCAGTGTTGTCCTAAATGCACTGACAGAATCACTTCATATGCCG TCCTCCTAGACAACCTCATTAACACTAACAAAGATATGGATACATTCACCGGTAGTGGAATCATTGATAATTGGTTGAATCCAGATGAGGCAACGCAATT CTTCAACAAGCTTTATCAGGATGCTTACTTGAAAAAATACTATTATCTAAAACTGTGCCAGGAGATGAACAGGTATCACCAGCGCAGGTTTCCAAGATGG CGTGCTCTGTTGATGAGCAATTACCTTGGCACCCCATGGGCAATTGTTTCTATTTTTGCGGCGGCTACTCTTTTGATTCTCACTATTGTTCAGACAATAT TTACCATCATTAAATAA
AA sequence Show only first row Show all	>Potri.001G333000.1 pacid=42792521 polypeptide=Potri.001G333000.1.p locus=Potri.001G333000 ID=Potri.001G333000.1.v4.1 annot-version=v4.1 MARSERDGGTRSADICGPSHGVDDQVTVDIDSLTSSVESMMSQNLIMPDKVCIFKVPHILRRHSEKAYTPNAFSIGPWHRHHPLMKSTEKIKLKYLKGLL CQRSASITLKGLIKSTRVIEKEARSCYAGPIDVGVEDFVRMLVIDGCFLIELFRKDHDHENHPREDDDPIFNMSCMKQYLYHDLILVENQIPWLVLENLF NMTADPENTTTLAQLALKFFDNIFSFHPPRKLPSYQGQKHLLDLLRNWLVLSSGKEENGETGWEPIPSVTNLVDAGIKLKAGESSSILDIKFENGVLEIP PLLIQETTEVIIRNLISYEQCCPKCTDRITSYAVLLDNLINTNKDMDTFTGSGIIDNWLNPDEATQFFNKLYQDAYLKKYYYLKLCQEMNRYHQRRFPRW RALLMSNYLGTPWAIVSIFAAATLLILTIVQTIFTIIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50160			Plant protein of unknown funct...		Potri.001G333000 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	1.00	0.8749
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	8.83	0.8512
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	10.95	0.8302
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Potri.005G161500 [exp]	12.00	0.8151
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.006G095500 [exp]	15.68	0.7919	UCP2.2
AT5G56350			Pyruvate kinase family protein...		Potri.019G032600 [exp]	17.94	0.8208
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.001G383600 [exp]	18.97	0.7920
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Potri.013G112500 [exp]	19.02	0.7408	Pt-CDPK2.4,CPK4
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	25.63	0.8426	Pt-VHA1.1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.001G131800 [exp]	31.43	0.8395

Compare expression of checked genes

Potri.001G333000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.