Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01810 652 / 0 unknown protein AT5G43230 512 / 4e-167 unknown protein AT2G42320 501 / 3e-165 nucleolar protein gar2-related (.1.2) AT3G57780 476 / 2e-155 unknown protein AT5G06930 382 / 5e-119 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057700 [exp] 607 / 0 AT5G43230 560 / 0.0 unknown protein Potri.008G177500 [exp] 598 / 0 AT5G43230 565 / 0.0 unknown protein Potri.016G051500 [exp] 538 / 8e-178 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.006G056800 [exp] 517 / 1e-169 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041590 [exp] 1072 / 0 AT3G01810 603 / 0.0 unknown protein Lus10022341 [exp] 1070 / 0 AT3G01810 605 / 0.0 unknown protein Lus10037001 [exp] 564 / 0 AT3G01810 583 / 0.0 unknown protein Lus10011304 [exp] 499 / 1e-163 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2) Lus10040502 [exp] 498 / 4e-163 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10015804 [exp] 397 / 9e-130 AT5G43230 371 / 2e-122 unknown protein Lus10015805 [exp] 175 / 1e-45 AT3G01810 160 / 5e-41 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.001G333200.3 pacid=42792488 polypeptide=Potri.001G333200.3.p locus=Potri.001G333200 ID=Potri.001G333200.3.v4.1 annot-version=v4.1 ATGGTTCTAGGTATGAATGGAAAGAACAGGAGAAGCTCCTCAGTTCAGGTTGATTATTTAGTGCACATTGAGGATATTAAGCCTTGGCCTCCATCTCAGT CTCTGAGATCCCTTCGTTCAGTCCTCATTCAGTGGGAAAATGGCGATCGCAATTCTGGGTCTACCAACACTGTTGTTCCTTCGCTTGGGACTGTTGTTGG TGAGGGGAAAATTGAGTTCAATGAGTCTTTTAGATTACCTGTGACTTTGTTGAGGGAAGTGCCTGTCAAAGGCAAGGATACTGATACCTTCCAGAAAAAT TGCTTAGAATTCAATTTGTATGAGCCTCGAAGGGATAAGGCTCAATTGCTGGCAACTGCTGTTGTAGACTTGGCAGATTATGGTGTCATCAAGGAAACTA TAAGCCTAACTGCTCCAGTAAACAGCAAGCGGAGCTTTAGGAGCACACCTCAGCCTATTTTGTACTTTAAAATCAAGCCAATTGATAAGGGCCGCACTAC CTCCTCATCCTTATCAAAAGGGGTATCAATGGACAAGAATGGTGGTGAATCAGTTTCAGCATTAATGAACGAAGGATATGCTGAAGAAGCCGAGGTTGCC TCTTTCACTGACGATGATGTTTCGTCTCACTCATCTCTGGCAAATGGGGGTTTGCCTCCTCAAAATGATGAGAATGGATCAGTCAGAATGACAGAGAGCA AGCATGTTGTTAACAAGGAGCCTACTGCAGCTTCACAGATTGTGATGGAAAAACAGACTGCACCACAAGAAAAGCTGAAAAGAAGTTCATCTTATTCGTC ATCTATAGATTTATCATCTGATGTTGGGAGCCCAGTCAATGGTCATGCTTCTGTAATGAACTCTGCTATCTCTAGTCCATCGTCAATTCTGAAAGATGAT GTTGCTCAAAGTGTTCATTCTTCTTCCCCATCCTTCACTTACAAAAGCAAAGATGAAGAGGCTAATACCAGCAAGAGAAGCAATGGTCCTCAGGATTTGT GGCAGGAAGTTCATGGAAAGGTGACTAATAGCATCACCACAATTAGGAGAGGTGATATTTTCCAGAACAATAATGAGAATACATCTTCAGATGAAAATCG CCACGTGGGTGCAAAGCTTGGCAATACAATCTCTGGTGATTTTCAAGTAAATGAAGAGCGTAGTCAGAATGGGGAAGAGCAAAAGCAATTCTCAGAAGAT GAACCAATTGATAATTTTCCATATGATTCTAGAGATGACGACTCACTGGGGAGTGATACATTTACTTCACCCGGGGGCTTTGATATGAAGGGAAATATCC TCAAAATTGATAGATTAAAGCATGTGAAATCTGTTAGGTCATCATCAGACTCACTGAGGAGCAATGGATTTGGTAGCAGAAATCAGCACAATGAAGTTGG TCTGATGAGAGATGCACATCACAGTGCTGGGAGCCTTAGCTTCAATGAAAGAAAAAATGCAAAGATTTATCCAAAAGATACCCGAACAACCATTTTAGAT GGCAAGATCCAGCAATTGGAACACAAAATAAAGATGCTCGAGGGAGAGTTGAAAGAAGCTGCTGCTATTGAGGCTTCTCTTTATTCTGTTGTTGCTGAGC ATGGAAGTTCCATGAGTAAGGTTCATGCTCCGGCTCGCCGCCTGTCTAGACTATATCTTCATGCTTGTAGAGAAAGTTTCCAGTCAAGAAGAGCTAGTGC AGCTAGAAGTGCCATTTCAGGACTAGTTCTGGTTGCAAAAGCATGTGGAAATGACGTCCCTAGGTTGACATTTTGGTTATCAAACTCTGTTGTTTTGAGG ACAATTATAAGCCAAACTATTGGTGATACAGAAAGCAAAATTTCTTCAGGACAACATACGGAAAGGAAGGGAAACAAGATCATATCATCTTCATTGAAAT GGAAAGAGGTATCTCCCAGCCGAAAGGGAAATAAGAATGGTCTTTATGAAGATTCCAGTGACTGGGAGGACCCACATGTATTTACATCTGCACTGGAAAG AGTTGAAGCTTGGATCTTCTCCCGCACCATTGAATCAATCTGGTGGCAGACTCTGACCCCACACATGCAAGCTGCTGCTACAAAGGAAATTGCTCAACTT GATAGTTCTGGCTCAAAGAAAAACTTTGGAAGGACATCAAGGTTGGTTCACGAAGACCAAGGGAACATTTCATTAGAGCATTGGAAGAAGGCATTCAAAG ATGCCTGTGAAAGACTTTGTCCTGTTCGAGCTGGAGGCCATGAATGTGGCTGTTTACCTGTGCTGGCAAGACTGATAATGGAGCAATGCGTAGCTAGATT AGATGTGGCAATGTTCAATGCTATCCTTCGTGAATCTGTTGATGAGATACCAACTGATCCAGTATCTGATCCCATCAGTGATCCAAAAGTTCTCCCAATT CCAGCAGGGTCATCGAGCTTTGGGGCTGGTGCACAACTGAAAAATGTGATTGGGAACTGGTCAAGATGGCTGACTGATCTATTTGGTATGGATGATGATG ACTTGCTTGAAGATGACAATGAAAACGATGAGATTGATGAGAGACCAGACACGACATTCAAGCCTTTCCATCTCCTTAATGCATTAAGTGATCTCATGAT GCTTCCAAAGGACATGCTCTTAAGTAAATCCATCAGAAAAGAGGTATGCCCCACATTTGCTGCACCATTGATCAAGAGGGTTCTTGATAATTTTGTCTTA GACGAGTTCTGTCCAGATCCCATTCCAGATGTTGTGTTTGAAGCCTTGGACACTGAGGATGCTATTGAGGCTGGAGAGGAGTCTGTCACAGCGGTACCAT GCATTGCAGCTCCTCCGATCTATTTACCACCTTCAGCAGCTTCCATTGCCAAAATCATTGGAGAGTTTGGAAGTCAATCTAAGCTGAGAAAAAGTGGCTC CTCAATTGTCAGAAAATCCTACACCAGTGATGATGAGCTTGATGAATTGAATTCACCTTTGGCTTCGATCATACTTGATGGGGTGCGGTCTTCACCTGCC CCAACAAAGCCCAGCTGGAAATCAAAGAAGGGCATTGACAATACCATCAGATATGAACTTCTCAGAGAGATATGGATGAACAGTGAGTAA
AA sequence Show only first row Show all	>Potri.001G333200.3 pacid=42792488 polypeptide=Potri.001G333200.3.p locus=Potri.001G333200 ID=Potri.001G333200.3.v4.1 annot-version=v4.1 MVLGMNGKNRRSSSVQVDYLVHIEDIKPWPPSQSLRSLRSVLIQWENGDRNSGSTNTVVPSLGTVVGEGKIEFNESFRLPVTLLREVPVKGKDTDTFQKN CLEFNLYEPRRDKAQLLATAVVDLADYGVIKETISLTAPVNSKRSFRSTPQPILYFKIKPIDKGRTTSSSLSKGVSMDKNGGESVSALMNEGYAEEAEVA SFTDDDVSSHSSLANGGLPPQNDENGSVRMTESKHVVNKEPTAASQIVMEKQTAPQEKLKRSSSYSSSIDLSSDVGSPVNGHASVMNSAISSPSSILKDD VAQSVHSSSPSFTYKSKDEEANTSKRSNGPQDLWQEVHGKVTNSITTIRRGDIFQNNNENTSSDENRHVGAKLGNTISGDFQVNEERSQNGEEQKQFSED EPIDNFPYDSRDDDSLGSDTFTSPGGFDMKGNILKIDRLKHVKSVRSSSDSLRSNGFGSRNQHNEVGLMRDAHHSAGSLSFNERKNAKIYPKDTRTTILD GKIQQLEHKIKMLEGELKEAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACRESFQSRRASAARSAISGLVLVAKACGNDVPRLTFWLSNSVVLR TIISQTIGDTESKISSGQHTERKGNKIISSSLKWKEVSPSRKGNKNGLYEDSSDWEDPHVFTSALERVEAWIFSRTIESIWWQTLTPHMQAAATKEIAQL DSSGSKKNFGRTSRLVHEDQGNISLEHWKKAFKDACERLCPVRAGGHECGCLPVLARLIMEQCVARLDVAMFNAILRESVDEIPTDPVSDPISDPKVLPI PAGSSSFGAGAQLKNVIGNWSRWLTDLFGMDDDDLLEDDNENDEIDERPDTTFKPFHLLNALSDLMMLPKDMLLSKSIRKEVCPTFAAPLIKRVLDNFVL DEFCPDPIPDVVFEALDTEDAIEAGEESVTAVPCIAAPPIYLPPSAASIAKIIGEFGSQSKLRKSGSSIVRKSYTSDDELDELNSPLASIILDGVRSSPA PTKPSWKSKKGIDNTIRYELLREIWMNSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01810			unknown protein		Potri.001G333200 [exp]	0	1
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	1.41	0.9403
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	1.73	0.9369	Pt-KT2.2
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Potri.016G134500 [exp]	3.16	0.9380
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	3.46	0.9352
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.006G056300 [exp]	4.47	0.9367
AT3G23200			Uncharacterised protein family...		Potri.008G165500 [exp]	5.09	0.9042
AT5G42710			unknown protein		Potri.014G185300 [exp]	5.65	0.9183
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	7.07	0.9260
AT5G62580			ARM repeat superfamily protein...		Potri.015G069200 [exp]	7.41	0.9258
AT2G47010			unknown protein		Potri.019G076900 [exp]	7.93	0.9130

Compare expression of checked genes

Potri.001G333200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.