Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14210 852 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 483 / 8e-160 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63410 415 / 4e-135 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 327 / 9e-101 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 198 / 1e-52 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G02780 172 / 8e-45 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 173 / 9e-45 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G53890 167 / 2e-42 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT1G55610 166 / 2e-42 BRL1 BRI1 like (.1.2) AT5G61350 144 / 2e-35 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095600 [exp] 802 / 0 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 801 / 0 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 499 / 3e-166 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 449 / 2e-146 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 422 / 8e-137 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 370 / 6e-117 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G075000 [exp] 181 / 4e-47 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.009G120400 [exp] 151 / 8e-38 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G164700 [exp] 146 / 5e-36 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032058 [exp] 966 / 0 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 943 / 0 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 913 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 885 / 0 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 596 / 0 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10020303 [exp] 424 / 2e-137 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 419 / 2e-135 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 415 / 7e-134 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029659 [exp] 354 / 2e-112 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 287 / 6e-86 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G333300.1 pacid=42789613 polypeptide=Potri.001G333300.1.p locus=Potri.001G333300 ID=Potri.001G333300.1.v4.1 annot-version=v4.1 ATGGGGTGGTCAAGCTGGCTTCTTTTTGTCTATCTTTCATGGAGTTTCTTTATTTCAAGTACTCATGAGTCACAAACTTATCAGCTACAGCTTCTTCTGC AACTAAGGAAGCATTTAGAGCATCCTCCCCAATTGGATATTTTGGAAGGCTACAATGGAGACCTTTGTAACTTGTCTTCAAGTCCAAATCTGGGAATTGT TTGCCTGGAAAATACTGTCACTGAACTCAAAATTATGGGAGACAAGCTTGTCAAGGTTAGTAATGACTTCAATGGATTTGCAATTCCTAATCAGACTTTA TCTGAAAGTTTCTCAATTGATTCTTTTGTTACTACACTGACAAGGTTAACTAGCTTGAAAGTTCTTAGGTTAGTGTCTTTGGGGATTTGGGGACCACTTC CTGATAAGATTCACAGGTTGTATTCACTTGAAGTTTTGGACTTGTGCTCAAATTTTTTTTTTGGTTCAGTTCCACCCCAGCTATCAAGACTGGTTAAGCT TAATTCTCTAACTTTAGATGGCAATTACTTCAATGGAAGTGTCCCTGATTGGCTGGATTCATTGTCAAATCTCACCATTTTGAGCTTGAAGAGTAACAGG TTTAATGGTCAGTTTCCTTCTTCAATATGCAGAATCATAACGCTAACTGATATTGCCTTGTCTCACAATCATCTTACTGGTAAATTGCCTGATTTGAGCA CCTTAAGTAGCCTACATATGTTGGATTTAAGAGAGAACAAGTTAGATTCTGACCTACCTGGAATGCCAAAAGAGTTGATTACAGTTCTCCTAAGCAATAA CTCCTTCTCGGGAAAAATTCCTGGGCAATTTGGTCAGCTGAATCAGCTTCAACACCTTGATTTGTCTTTAAATCATCTCAGCGGAACACCTCCCTCTTCC ATGTTCTCTCTGCCGAACATCAGTTACTTGAATTTAGCATCAAATATGCTGAGTGGGTCACTTCCAAATCATCTTCTTTGTGGCAGCAAACTTGGGTTTG TCGATCTTTCTTCAAACAAGTTAATCGGTGGACTTCCCTCTTGCTTGGGAAGCATGCTAGATAAGAGAGTCGTTAAGTTCGGAGGGAATTGCTTATCCGT TGATTCCCAAAACCAGCATCAGGAGTCGTACTGTAATGTGGCTAATGAGGAGGGGAAACAATCAAGATGCAGAGCAGTAGGAATATTAGTTGCTGCCATT GGTGGAGCTGTTCTTGTTATCAGTCTTTTGGCATTGTTGGTTGTCTTTTTGCGCAGAAGATACCGTTCTAGAAGGACATTCAAGCAGAATATAATTTCCA AGGTTGAACAAGATAACATACCAACTGGGGTTTCTTCTGAAGTCCTAGCAAATGCCAGATTCATTTCTGAAGCAGCCAAGCTAGGGACACAAGGAGCCCC AGCATGCCGTGTATTTACCTTGGAAGAGTTAAAGGAAGCCACAAACAACTTTGATTCATCGTCATTTATGGGAGAAGGCTCAATTGGGAAGATTTACAAA GGGAGATTGGAGAACGGAACCTGTGTTGCTATACGATCACTGTCTTTGTTGAAGAAGCATTCAATTCAAAATCTCAAGGTTCGCCTGGATTTGCTTTCAA AGCTGCACCATTCACATTTGGTTGGTCTGTTGGGTCATTGCGTTGACAGTGGCCTGCAAAATGATTCTAGTAGCACCAAAGTCTTCCTTGTTTATGAATA TTTGCCCAATGGAAACTATCGTACTCATCTTTCAGAAATGTGCCCAGAGAAAGCCCTTGGGTGGCCAGAAAGATTGGCAATTCTTATTGGTGTTGCCAAG GCTGTGCATTTTCTACATACCGGGGTGATTCCTGGTGCTTTTAACAATAGACTGAAAACAGATAATATATTGCTTGATGAGCATCGGATTGCGAAGCTAA GTGACTATGGAATGTCCATCATCACAGATGAGATTGAAAAACCTGAGGCAAAGGGAGATGTCCTGAAATCAAGTCACAAGATAAACTTAGAGGATGATGT CTACAACTTTGGGTTCATACTGCTTGAATCACTCGTTGGGCCTATAGTAACCGGGAAAGGAGAAGCATTTCTGCTAAATGAAATGGCATCCTTTGGAAGC CAGGATGGTCGAAGAAAAATTGTGGATCCAATTGTCTTAACTACTTGCTCACAGGAGTCATTATCAATTTTGGTTTCCATCACGAGTAAATGCATATCTC CTGAACCATCAACTCGTCCATCCTTCGAGGATGTCCTCTGGAACTTACAGTACGCAGCTCAAGTCCAAGCCATGGCTGATGCTGATCAGTAA
AA sequence Show only first row Show all	>Potri.001G333300.1 pacid=42789613 polypeptide=Potri.001G333300.1.p locus=Potri.001G333300 ID=Potri.001G333300.1.v4.1 annot-version=v4.1 MGWSSWLLFVYLSWSFFISSTHESQTYQLQLLLQLRKHLEHPPQLDILEGYNGDLCNLSSSPNLGIVCLENTVTELKIMGDKLVKVSNDFNGFAIPNQTL SESFSIDSFVTTLTRLTSLKVLRLVSLGIWGPLPDKIHRLYSLEVLDLCSNFFFGSVPPQLSRLVKLNSLTLDGNYFNGSVPDWLDSLSNLTILSLKSNR FNGQFPSSICRIITLTDIALSHNHLTGKLPDLSTLSSLHMLDLRENKLDSDLPGMPKELITVLLSNNSFSGKIPGQFGQLNQLQHLDLSLNHLSGTPPSS MFSLPNISYLNLASNMLSGSLPNHLLCGSKLGFVDLSSNKLIGGLPSCLGSMLDKRVVKFGGNCLSVDSQNQHQESYCNVANEEGKQSRCRAVGILVAAI GGAVLVISLLALLVVFLRRRYRSRRTFKQNIISKVEQDNIPTGVSSEVLANARFISEAAKLGTQGAPACRVFTLEELKEATNNFDSSSFMGEGSIGKIYK GRLENGTCVAIRSLSLLKKHSIQNLKVRLDLLSKLHHSHLVGLLGHCVDSGLQNDSSSTKVFLVYEYLPNGNYRTHLSEMCPEKALGWPERLAILIGVAK AVHFLHTGVIPGAFNNRLKTDNILLDEHRIAKLSDYGMSIITDEIEKPEAKGDVLKSSHKINLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGS QDGRRKIVDPIVLTTCSQESLSILVSITSKCISPEPSTRPSFEDVLWNLQYAAQVQAMADADQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14210			Leucine-rich repeat protein ki...		Potri.001G333300 [exp]	0	1
AT2G28410			unknown protein		Potri.009G013800 [exp]	1.00	0.8303
AT5G19290			alpha/beta-Hydrolases superfam...		Potri.008G040000 [exp]	4.24	0.7949
AT1G67040			unknown protein		Potri.004G098300 [exp]	4.47	0.7953
AT1G01540			Protein kinase superfamily pro...		Potri.014G088800 [exp]	10.90	0.7661
AT1G27190			Leucine-rich repeat protein ki...		Potri.004G081700 [exp]	13.49	0.7311
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.010G237800 [exp]	14.14	0.7903
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.001G206900 [exp]	14.69	0.6954
					Potri.018G076150 [exp]	15.00	0.7190
AT5G10310			unknown protein		Potri.007G095400 [exp]	16.43	0.7548
AT5G19390			Rho GTPase activation protein ...		Potri.001G275200 [exp]	21.84	0.7578

Compare expression of checked genes

Potri.001G333300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.