Plant FIBer expression Database

Potri.001G333400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39640 768 / 0 GGT1 gamma-glutamyl transpeptidase 1 (.1.2)
AT4G39650 729 / 0 GGT2 gamma-glutamyl transpeptidase 2 (.1)
AT4G29210 565 / 0 GGT4, GGT3 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
AT1G69820 285 / 1e-93 GGT4, GGT3 gamma-glutamyl transpeptidase 4, gamma-glutamyl transpeptidase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G082800
[exp]
881 / 0 AT4G39640 786 / 0.0 gamma-glutamyl transpeptidase 1 (.1.2)
Potri.018G069450
[exp]
588 / 0 AT4G29210 789 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035003
[exp]
589 / 0 AT4G29210 754 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
Lus10012925
[exp]
495 / 9e-171 AT4G29210 644 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0052 NTN PF01019 G_glu_transpept Gamma-glutamyltranspeptidase
Representative CDS sequence
>Potri.001G333400.1 pacid=42787660 polypeptide=Potri.001G333400.1.p locus=Potri.001G333400 ID=Potri.001G333400.1.v4.1 annot-version=v4.1
ATGGCATCTGCATCTTTTCTCTTATTATGGACGACTCTTGCATTTCTCTTCAGTTCACCACTGCTGCCTACTTTGGGTCTTGGCAATCTGGGTGGCCCAA
CCCATCAAAGACATGATGTTGTGGCAAGCCATGGTGTTGTTGCTACTGATGATGGCAGATGTTCCAGAATTGGGATGGATGCTCTTCGTGAAGGTGGTCA
TGCAGTTGATGCTGCTGTCGCCGCATCTCTTTGCTTGGGAGTCGTGGGACTAGCGTCAAGTGGTATGGGGGGAGGATCCTTTATGTTGATCTTGCTAGCT
AGCGGAGAGGCACAAGCCTTTGATATGAGAGAAACTGCCCCTATGAAAGCTTCCGAGGATATGTATGCTGGCAATGCTACTAAAAAAGCTAGAGGTGCGC
TCTCAATAGCAGTTCCAGGGGAACTTGCTGGTCTTCACAGAGCTTGGAGAAAGTATGGAAGGCTTCCATGGAAAAGGCTTGTAAGGCCAGCTGAGCAGCT
TGCTTGCAAAGGATTCAAAATTTCACCGTACCTTCATATGCAGATGGTCAAAACAGAATCAGGGATTCTGGCTGACAAGGGGCTTCGAGACTTGCTTACA
TCCAATGGCAAACTTTTGCAACCAGGAAATATCTGCCACAACAAGAAACTAGCACACACACTCAGAAAGATATCAAAGCATGGCATAGAGGCCTTCTATA
ACGGATCAATAGGATCCAAATTGGTTAAGGATATCCAGAAGGCTGGAGGGATCTTGACAAGAGAGGATTTGCGGAGATATCAAGTTAAAATGCGAGATCC
AATCGTTGCTGATATTCTAGGCTTCAAAATACTTGGAATGCCCCCTCCTTCTTCTGGGGGTGCTTCAATGATGCTCATTTTGAACATTCTTGCCCAATAC
GGAGCCCCTTCTGGCATTTCGGGCCCTCTTGGGATCCATCGAGAAATTGAAGCTCTAAAACATGCATTCGCTGTTAGAATGAATCTTGGTGACCCTGATT
TTATCAATGTCACTGAAGTCGTATCCGACATGCTGTCTCCCAAATTTGCTGAAATGTTAAAGAAAACCATATATGACAATATGACTTTTGATCCTCGTCA
TTATGGTGGCAGGTGGAACCAGATCCATGATCACGGCACCAGTCATATTTCAGTTGTAGATATTGAACGAAATGCTGTCTCCATGACCAATACTGTGAAC
GCATATTTTGGTTCGAATATACTGTCTCCGAGTACGGGAATACTCCTAAACAATGAAATGGATGAGTTCTCCATCCCCATGAACAATGGAGACGTTCCAC
CTCCAGCACCTCCCAATTCCATCCGCCCAGGGAAGAGGCCATTATCATCCATGACGCCTACTATCATTTTGAAGGATGAGAAACTGAAAGCCGTGGTAGG
TGCAAGTGGAGGAGCCATGATCATTGCTGGGACTACAGAGGTTATCTTAAATCATTTGAGGGGCATGGATCCACTCCATTCTGTGCTTGCTCCAAGAGTT
TATCATCAGCTGATACCTAACGTGGTGCAGTATGAGAATTGGACGACACCATATGGTGAACACTATGAAGTTCCTGCTAATGTCAGAACATTCCTTCGTA
AACGGGGCCATGTCCTACAGAGCCTTGCTGGTGGGAGTATTTGTCAATTCATTTTTGTTGATGCAGAAACTAGCAGGAAAAATAAAGGTAGGGGTGAGCT
AGTGGGTGTCAGCGACCCTAGAAAAGGAGGTTTTCCTGCTGGCTATTAA
AA sequence
>Potri.001G333400.1 pacid=42787660 polypeptide=Potri.001G333400.1.p locus=Potri.001G333400 ID=Potri.001G333400.1.v4.1 annot-version=v4.1
MASASFLLLWTTLAFLFSSPLLPTLGLGNLGGPTHQRHDVVASHGVVATDDGRCSRIGMDALREGGHAVDAAVAASLCLGVVGLASSGMGGGSFMLILLA
SGEAQAFDMRETAPMKASEDMYAGNATKKARGALSIAVPGELAGLHRAWRKYGRLPWKRLVRPAEQLACKGFKISPYLHMQMVKTESGILADKGLRDLLT
SNGKLLQPGNICHNKKLAHTLRKISKHGIEAFYNGSIGSKLVKDIQKAGGILTREDLRRYQVKMRDPIVADILGFKILGMPPPSSGGASMMLILNILAQY
GAPSGISGPLGIHREIEALKHAFAVRMNLGDPDFINVTEVVSDMLSPKFAEMLKKTIYDNMTFDPRHYGGRWNQIHDHGTSHISVVDIERNAVSMTNTVN
AYFGSNILSPSTGILLNNEMDEFSIPMNNGDVPPPAPPNSIRPGKRPLSSMTPTIILKDEKLKAVVGASGGAMIIAGTTEVILNHLRGMDPLHSVLAPRV
YHQLIPNVVQYENWTTPYGEHYEVPANVRTFLRKRGHVLQSLAGGSICQFIFVDAETSRKNKGRGELVGVSDPRKGGFPAGY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39640 GGT1 gamma-glutamyl transpeptidase ... Potri.001G333400
[exp]
0 1
AT5G23280 TCP TCP7 TCP family transcription facto... Potri.009G009400
[exp]
30.49 0.4329
AT5G12930 unknown protein Potri.003G207500
[exp]
42.33 0.4570
Potri.002G093000
[exp]
53.47 0.4001
AT4G21760 BGLU47 beta-glucosidase 47 (.1) Potri.004G019800
[exp]
55.85 0.4587
AT5G66815 unknown protein Potri.014G034500
[exp]
59.89 0.4580
Potri.006G229050
[exp]
60.86 0.3936
Potri.003G056450
[exp]
80.16 0.4301
AT1G79400 ATCHX2 cation/H+ exchanger 2, cation/... Potri.003G194100
[exp]
81.97 0.3748 ATCHX1.2
AT4G27330 NZZ NZZ, SPL NOZZLE, sporocyteless (SPL) (.... Potri.001G409000
[exp]
91.44 0.3888
AT5G47530 Auxin-responsive family protei... Potri.019G096400
[exp]
94.29 0.4235

Potri.001G333400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.