Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14220 702 / 0 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT4G01690 152 / 4e-40 PPOX, HEMG1, PPO1 Flavin containing amine oxidoreductase family (.1.2) AT3G10390 46 / 7e-05 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G16310 45 / 0.0001 LDL3 LSD1-like 3 (.1) AT1G62830 45 / 0.0002 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT1G65840 43 / 0.0006 ATPAO4 polyamine oxidase 4 (.1) AT5G61290 42 / 0.0009 Flavin-binding monooxygenase family protein (.1) AT3G04650 42 / 0.001 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186300 [exp] 167 / 2e-45 AT4G01690 822 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Potri.014G111600 [exp] 167 / 2e-45 AT4G01690 845 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Potri.001G344800 [exp] 51 / 1e-06 AT3G09580 540 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.005G055800 [exp] 50 / 3e-06 AT3G04650 657 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.005G235400 [exp] 45 / 0.0001 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.001G438500 [exp] 45 / 0.0001 AT1G56000 528 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.008G170300 [exp] 45 / 0.0002 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.008G035200 [exp] 45 / 0.0002 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 45 / 0.0002 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010082 [exp] 164 / 2e-44 AT4G01690 823 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Lus10007194 [exp] 152 / 8e-40 AT4G01690 809 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Lus10033928 [exp] 46 / 9e-05 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10012283 [exp] 45 / 0.0002 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10015996 [exp] 44 / 0.0004 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10019725 [exp] 42 / 0.001 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G333500.1 pacid=42792220 polypeptide=Potri.001G333500.1.p locus=Potri.001G333500 ID=Potri.001G333500.1.v4.1 annot-version=v4.1 ATGACTGCAGCTGCCAAAGACGACGATTTTGGCAGTAAGCAAAGTAAAAATGTAGCTGTTATAGGTGCAGGCGTTAGTGGGCTTGCTGCTGCATACAAGC TGAAATCAAATGGGGTGAAAGTGACAGTCTTTGAAGCTGAAGGAAGAGCTGGAGGCAAATTAAGAAGTGTTTCCCATCATGATCTTGTTTGGGATGAAGG AGCTAATACCATGACTGAGAGTGAAGTGGAGGTCAAAAGCTTACTTGATGATCTTGGGCTTAGAGAGAAGCAACAATTTCCAATTGCACAGAACAAACGG TATATTGTGAGGAATGGAATGCCTGTACTGATACCAACAAATCCAGTTGCACTGATCAAGAGCAACTTTCTCTCGGCGCAATCAAAGTTGCAAATTATTT TGGAGCCATTCTTATGGAAGAAAAATGAGTCCTCAAAAGTGTCTGACGCTGATATACAAGAAAGTGTTGGTGAGTTCTTTCAGCGACATTTTGGGAAAGA GGTTGTTGATTATCTTATCGATCCTTTTGTTGCTGGCACAAGTGCTGGAGATCCTGAATCTCTTTCTGCACGCCACAATTTTCCAGACCTGTGGAATCTA GAGAAGCGGTTTGGTTCTATCATAGCTGGGGCAGTTAAAGCCAAGCTATCTGCCAAAAAAGAGAAGAATGGAGAAAAAAAAGGTTCTTCGGAAAAAAAGA AACGTCAACATGGTTCATTTTCTTTTCTAGGTGGAATGCAGACACTCACTGATACGCTGTGCACAGAGCTTGGGAAAGATGGAGTTAAACTAGAATCAAA GGTCTTGTCATTGTCTTACAGTTATGATGGCAAGTCAACTTTTGAGAACTGGTCAGTTTCATATGCTTCTAAGGGTGGCAAGCATGCACAAGCATCATCT TATGATGCTGTCATCATGACGGCACCATTGTGCAATGTTAAAGAAATTAATATTAATAAAGGCAGAAATCGCTTCTCGCTGGACTTTCTTCCCCAGATGA GTTACATGCCACTTTCAGTCATAATTACTACCTTTAAGAAAGAGGACGTCAAGAGGCCTCTAGAAGGATTTGGAGTTCTTGTTCCTTCTAAGGAGCAACA AAATGGTTTAAAAACTCTTGGTACACTCTTCTCATCTATGATGTTTCCAGATCGTGCACCCAAGGACTCGTATCTCTATACCACCTTTGTTGGTGGGAGC CGAAACAAGGAACTAGCAAAAGCTTCAACGGATGATTTGAAAGCGATTGTTACTTCTGATCTTAGACAGCTGTTAGGGGTGGAGGGAGAGCCGAAATTTG TGAATCATTACTACTGGAGTAAAGCATTTCCTTTGTATGGAAAGAACTATGATTTAGTGTTAGAAGGAATTGAGAGAATGGAGAAAAATCTTCCTGGATT TTTCTACGCAGGTAACCACAGAGGTGGATTGTCCGTGGGCAAAGCAATAGCCTCTGGATGCAAAGCAGCTGATCTTGTGATCTCCCATTTGAATTCTTCG GCTGATGACAAGATGCTGAAGAAAGGATCACAATCGTAG
AA sequence Show only first row Show all	>Potri.001G333500.1 pacid=42792220 polypeptide=Potri.001G333500.1.p locus=Potri.001G333500 ID=Potri.001G333500.1.v4.1 annot-version=v4.1 MTAAAKDDDFGSKQSKNVAVIGAGVSGLAAAYKLKSNGVKVTVFEAEGRAGGKLRSVSHHDLVWDEGANTMTESEVEVKSLLDDLGLREKQQFPIAQNKR YIVRNGMPVLIPTNPVALIKSNFLSAQSKLQIILEPFLWKKNESSKVSDADIQESVGEFFQRHFGKEVVDYLIDPFVAGTSAGDPESLSARHNFPDLWNL EKRFGSIIAGAVKAKLSAKKEKNGEKKGSSEKKKRQHGSFSFLGGMQTLTDTLCTELGKDGVKLESKVLSLSYSYDGKSTFENWSVSYASKGGKHAQASS YDAVIMTAPLCNVKEININKGRNRFSLDFLPQMSYMPLSVIITTFKKEDVKRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRAPKDSYLYTTFVGGS RNKELAKASTDDLKAIVTSDLRQLLGVEGEPKFVNHYYWSKAFPLYGKNYDLVLEGIERMEKNLPGFFYAGNHRGGLSVGKAIASGCKAADLVISHLNSS ADDKMLKKGSQS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14220		HEMG2, MEE61, P...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G333500 [exp]	0	1
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	3.74	0.8214
AT2G47115			unknown protein		Potri.002G190200 [exp]	4.69	0.8409
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G205275 [exp]	11.83	0.8313
AT2G21120			Protein of unknown function (D...		Potri.019G001100 [exp]	13.11	0.7879
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.001G018800 [exp]	13.41	0.8227
AT1G70150			zinc ion binding (.1)		Potri.010G037600 [exp]	13.85	0.8101
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	15.19	0.8349
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Potri.002G169400 [exp]	16.61	0.8178
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.001G222500 [exp]	18.16	0.7782
AT5G23520			smr (Small MutS Related) domai...		Potri.018G145524 [exp]	18.70	0.8006

Compare expression of checked genes

Potri.001G333500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.