Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14230 974 / 0 unknown protein AT5G13530 77 / 3e-14 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT2G03430 68 / 2e-12 Ankyrin repeat family protein (.1) AT2G14255 67 / 2e-11 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G57740 66 / 5e-11 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G37500 66 / 7e-11 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT3G02850 66 / 7e-11 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G20350 64 / 2e-10 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G13300 61 / 2e-09 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT1G07710 61 / 2e-09 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057300 [exp] 991 / 0 AT5G14230 843 / 0.0 unknown protein Potri.011G151300 [exp] 650 / 0 AT5G14230 568 / 0.0 unknown protein Potri.013G062000 [exp] 111 / 2e-25 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 89 / 2e-18 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 78 / 1e-14 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.001G029600 [exp] 77 / 3e-14 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.017G135400 [exp] 77 / 3e-14 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.005G069300 [exp] 76 / 5e-14 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.004G083300 [exp] 74 / 2e-13 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022339 [exp] 1060 / 0 AT5G14230 974 / 0.0 unknown protein Lus10041588 [exp] 1046 / 0 AT5G14230 962 / 0.0 unknown protein Lus10015811 [exp] 820 / 0 AT5G14230 727 / 0.0 unknown protein Lus10036990 [exp] 598 / 0 AT5G14230 510 / 5e-174 unknown protein Lus10036989 [exp] 237 / 4e-73 AT5G14230 224 / 2e-68 unknown protein Lus10020272 [exp] 98 / 5e-21 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 87 / 9e-18 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10003748 [exp] 81 / 9e-16 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10037694 [exp] 79 / 7e-15 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 79 / 9e-15 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.001G333600.1 pacid=42790354 polypeptide=Potri.001G333600.1.p locus=Potri.001G333600 ID=Potri.001G333600.1.v4.1 annot-version=v4.1 ATGACTGTCTTCTCCGGCAAGCAGGTAGTCCCGGTGGACTACGAGTCGGAAGTCTCACAACGGCTTCTAGAAGCATCACTCTCCGGTGATCTGAAATCGG CCTTAGAGTGCATCGCCGATCCGTTTATTGATGTGAACTACATTGGAGCTGTTTGTTTGAAGAGTAGAAAGAGTGAGGTTGTTTTAAACGATGAGTCAGC CAGTGAAGTCTCTGTTGATTATCAAGAGTTAAAGACTGATGTTACTGCGTTGTTTCTCGCTGTTCATGCTGGAAATGTTGCTCTCGTCAAGAAATTGCTG AGTGCTGGCGCTGATGTCAACCAGAAACTCTTCAGAGGTTTTGCAATTACAGCAGCAGTGAGGGAGGGCCACCGAGAGATTCTGGAGATCTTGCTTAAAG CCGGGGCATCTCAGCCGGCTTGTGAGGAGGCTCTGCTTGAAGCGGGCTTCCATGGGCGAGCTAGCCTTGCAGAACTGCTCATGGGTTCTGATTTGATTCG GCCCCGTGTTGCTGTGCATGTTCTTGTCACCGCATGCTGCAGGGGGTTTGCAGATGTGGTGGGCACTCTACTGGAGTGTGGTGTTGATGTTGATGAAACG GATAGAATGATGCTGTTGTCATCTAAGCCTTCTCTGCATGCAAATGTTGACTGTAATGCAATTGTTGCTGCAGTAGTTAGTCGGCAGGTTCCAGTTGTCC ATTTGCTTCTCAAGGCCGGTGCAAAGACAGATTTCAAAGTTAGACTGGGAGCATGGTCGTGGGATGCAACTACAGGAGAAGAGTTTCGAGTGGGTGCTGG ACTTGCAGAGCCATATGCCATCACCTGGTGTGCGGTGGAGTATTTTGAAATCACTGGCACTATCTTGCGAATGCTCCTCCAGCATCTTTCTCCTGACACT CCTCACCATGGAAGAACTCTCCTCCACCATGCCATTCTCTGTGGAAATGCTGCCGCCGTCAATGTGCTCTTAAGCAGCGGAGCCAATGTAGAGGCCTCTG TTAAAACCCAGAAAACAGAGTTCCGACCAGTACATATGGCTGCCCGTTTAGGCTCATCTAAAACCCTCCAATGCCTCATTGACTCAGGCTGTGATATAAA CTCGAGGACTGATTCTGGAGACACTGCTTTAATGATATGCGCCAAATACAAGCAAGAAGAGTGTCTGAGAATACTGGCTATGGCCGGTGCTGATTTTGGC TTAGTTAATACTGCTGGCCAATCTGCAACTTCATTCGCTGGTTCAAACCAGTGGTCTCTTGGTTTCCAGCAAATAATTTTTGAAGTTATTAGGGCTGGAA AGATTCCCAAATCCAGCACTGCTTCTGTTTTCTCTTCACTAATCTTTGTAGCTCAAGCTGGTGATATAGAAGCCTTGAAAGCACTCATCAAGTGGGGAGA AGTTGATATTGATTATCAGGATGATAATGGTTTCTCAGCAGTCATGTTTGCAGCTTTGAATGGTCATGTTGAAGTATTTCGACTGCTGGTCTATGCCGGG GCTGATGTAAAGCTTTGTAACAAAGCTGGCGAAACTGCAATCACCCTTTCTGAACTGAATGAGAATCATGATCTGTTTGAGAAGGTGATGCTTGAATTTG CTCTTCAAATGGGCAACCGCAATGCTGGAGGATTCTATGCATTGCACTGCGCAGCGCGTCGTGGGGACGTGGATGCAGTCAAATTATTGATAAGTAGAGG TTATGATGTAAATGTCCCTGATGGGGATGGCTACACTCCTCTCATGTTGGCTGCTAGAGAGGGCCACGGGTCCATGTGCGAGCTCTTGATCTCACACGGG GCTCAATGTGAAATCAAGAACGCTAGAGGTGAAACAGCACTCTCACTTGCAAGGAGATATGTTGGTATAAAAAATGAAGCAGAACAAGTAATACTAGACG AGCTCGCTTGCAAGCTGGTGTTAGGTGGTTCACAGGTAATGAAACACACCAAGCGAGGGAGTGGTGTTCCGCATGGAAAGGAGATAAAAATGATCGGAGA AGCTGGCGTGCTTAGATGGGGAAAATCAAGTAGGAGAAATGTAATATGCAGGGAAGCAGAAGCGGGGCCAAGCCCAACCTTTCGAAGGAATAGGCGGAGT AGGGGTGATGCTGATGTTCCTGGTCTGTTTCGGGTTTTGACTACTAAGAACAAGGAGGTGCACTTCGTATGTGATGGTGGGCTGGAGATGGCTGAGCTCT GGGTCAGGGGAATACAACTCGTGTCAAGGAAGGCTATCTGCGGTTAA
AA sequence Show only first row Show all	>Potri.001G333600.1 pacid=42790354 polypeptide=Potri.001G333600.1.p locus=Potri.001G333600 ID=Potri.001G333600.1.v4.1 annot-version=v4.1 MTVFSGKQVVPVDYESEVSQRLLEASLSGDLKSALECIADPFIDVNYIGAVCLKSRKSEVVLNDESASEVSVDYQELKTDVTALFLAVHAGNVALVKKLL SAGADVNQKLFRGFAITAAVREGHREILEILLKAGASQPACEEALLEAGFHGRASLAELLMGSDLIRPRVAVHVLVTACCRGFADVVGTLLECGVDVDET DRMMLLSSKPSLHANVDCNAIVAAVVSRQVPVVHLLLKAGAKTDFKVRLGAWSWDATTGEEFRVGAGLAEPYAITWCAVEYFEITGTILRMLLQHLSPDT PHHGRTLLHHAILCGNAAAVNVLLSSGANVEASVKTQKTEFRPVHMAARLGSSKTLQCLIDSGCDINSRTDSGDTALMICAKYKQEECLRILAMAGADFG LVNTAGQSATSFAGSNQWSLGFQQIIFEVIRAGKIPKSSTASVFSSLIFVAQAGDIEALKALIKWGEVDIDYQDDNGFSAVMFAALNGHVEVFRLLVYAG ADVKLCNKAGETAITLSELNENHDLFEKVMLEFALQMGNRNAGGFYALHCAARRGDVDAVKLLISRGYDVNVPDGDGYTPLMLAAREGHGSMCELLISHG AQCEIKNARGETALSLARRYVGIKNEAEQVILDELACKLVLGGSQVMKHTKRGSGVPHGKEIKMIGEAGVLRWGKSSRRNVICREAEAGPSPTFRRNRRS RGDADVPGLFRVLTTKNKEVHFVCDGGLEMAELWVRGIQLVSRKAICG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14230			unknown protein		Potri.001G333600 [exp]	0	1
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	6.32	0.7917
AT5G43230			unknown protein		Potri.008G177500 [exp]	6.48	0.8055
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G156600 [exp]	7.14	0.7632
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.019G111700 [exp]	9.94	0.7405
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G156800 [exp]	10.81	0.7356
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	13.49	0.7732
AT1G19835			Plant protein of unknown funct...		Potri.002G024400 [exp]	15.49	0.7950
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	17.20	0.7778
AT1G24030			Protein kinase superfamily pro...		Potri.008G145900 [exp]	17.86	0.7746
AT4G34215			Domain of unknown function (DU...		Potri.001G300800 [exp]	19.07	0.7191

Compare expression of checked genes

Potri.001G333600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.