Plant FIBer expression Database

Potri.001G333700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01800 316 / 3e-109 Ribosome recycling factor (.1)
AT3G63190 110 / 1e-28 HFP108, AtcpRRF, RRF "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G052400
[exp]
113 / 1e-29 AT3G63190 308 / 2e-105 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035226
[exp]
328 / 9e-114 AT3G01800 367 / 5e-129 Ribosome recycling factor (.1)
Lus10032060
[exp]
324 / 9e-112 AT3G01800 372 / 4e-131 Ribosome recycling factor (.1)
Lus10042587
[exp]
107 / 2e-27 AT3G63190 315 / 2e-108 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1)
Lus10022041
[exp]
92 / 2e-21 AT3G63190 291 / 9e-99 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01765 RRF Ribosome recycling factor
Representative CDS sequence
>Potri.001G333700.3 pacid=42790607 polypeptide=Potri.001G333700.3.p locus=Potri.001G333700 ID=Potri.001G333700.3.v4.1 annot-version=v4.1
ATGGCTCTGCTGCACCTAAGACGCACAATCTCTCCTCGAAACTCTTTTCTCTTTCTTCTTCGAAGCTCCACTAGTTTCACCAAAGCCCGCACTTTCTCTA
ACACCACCACCCTGTTCTCTCCCCATCTTCTCTCAAACTCTGTTTCCCACAAACTCCCATCAGCAACTTTGCCTTCCTTTGATTTCCTCAAACAGTCTCG
TCGTGGCTTTGCTAAAGGCAAAAATAAATCAAAGGATGACTCTGCTGGGGGTACAGTTGAATTTGTGGATATTGGGCCTACTGTTAAGGAAACTGCTAAT
TCGCAGATGGATGCGGCTGTAGTTGCATTATCTCGAGAACTCCAGAAATTAAGAACTGGAAGGGCATCTGCAGGAATGCTTGATCACATCATTGTCGAAA
CCGATGGTGTGAAGCTGCCTTTAAATCGATCAGCTGTTGTTTCAGTCATGGATGCTAAAACCTTATCCGTTAATCCATATGATCCAAATACCCTCAAGCA
GCTAGAGAATGCCATTGTTTCGTCTCCGTTGGGATTAAATCCTCAAAGGGATGGTGATCGATTGATTGCAGCTATACCACCATTAACCAAAGAGCATACC
CAGGCTATGTGTAAGGTGGTTGCAAAGTCTTGTGAAGATTGTAGGCAAAGTATAAGAAGGGCTCGCCAAAAGGCAATGGATACAGTAAAAAAAGCAGGTT
CAAGTTTCCCCAAGGATGATGCCAAGAAACTAGAGAAAGAGATTGAAGAGATGACGAAAAAGTTTGTCAAGTCAGCAGAGGACATGTGTAATAACAAGGA
AAAAGAAATTAAGACTGGCTAA
AA sequence
>Potri.001G333700.3 pacid=42790607 polypeptide=Potri.001G333700.3.p locus=Potri.001G333700 ID=Potri.001G333700.3.v4.1 annot-version=v4.1
MALLHLRRTISPRNSFLFLLRSSTSFTKARTFSNTTTLFSPHLLSNSVSHKLPSATLPSFDFLKQSRRGFAKGKNKSKDDSAGGTVEFVDIGPTVKETAN
SQMDAAVVALSRELQKLRTGRASAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLSVNPYDPNTLKQLENAIVSSPLGLNPQRDGDRLIAAIPPLTKEHT
QAMCKVVAKSCEDCRQSIRRARQKAMDTVKKAGSSFPKDDAKKLEKEIEEMTKKFVKSAEDMCNNKEKEIKTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G01800 Ribosome recycling factor (.1) Potri.001G333700
[exp]
0 1
AT5G11630 unknown protein Potri.006G237800
[exp]
1.41 0.8964
AT1G75670 DNA-directed RNA polymerases (... Potri.005G236800
[exp]
2.44 0.8761
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Potri.006G039600
[exp]
3.16 0.8770
AT2G39795 Mitochondrial glycoprotein fam... Potri.010G198600
[exp]
3.16 0.8745
AT1G18800 NRP2 NAP1-related protein 2 (.1) Potri.017G080700
[exp]
3.31 0.8402
AT4G02930 GTP binding Elongation factor ... Potri.002G215900
[exp]
4.89 0.8750 Pt-TUFA.3
AT3G21465 unknown protein Potri.008G205300
[exp]
5.91 0.8686
AT4G23620 Ribosomal protein L25/Gln-tRNA... Potri.001G097801
[exp]
6.00 0.8432
AT2G42710 Ribosomal protein L1p/L10e fam... Potri.014G143000
[exp]
6.92 0.8711
AT2G31060 EMB2785 EMBRYO DEFECTIVE 2785, elongat... Potri.013G123700
[exp]
7.48 0.8268

Potri.001G333700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.