Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47455 54 / 1e-10 unknown protein AT4G17310 52 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G068600 [exp] 82 / 1e-21 AT4G17310 94 / 2e-26 unknown protein Potri.006G237800 [exp] 37 / 0.0002 AT5G11630 99 / 8e-29 unknown protein Potri.018G082800 [exp] 37 / 0.0003 AT3G13674 / unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028954 [exp] 46 / 1e-07 AT4G17310 100 / 5e-29 unknown protein Lus10007477 [exp] 44 / 6e-07 AT4G17310 95 / 6e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G333800.7 pacid=42793436 polypeptide=Potri.001G333800.7.p locus=Potri.001G333800 ID=Potri.001G333800.7.v4.1 annot-version=v4.1 ATGGCTTTCTCCTCATCTTGCAGGAGATTTATCTCCAAATCATCTCTATCGTCCATCAAATCAGCCATCAGGTCATCCAACGTTCCTAAATCTCCCTCCA TGCCCACCAGATCTGCTACTGCTCTCCCATCATCCAAACCACCAACCTCCCCTCAATTCTCCTTTTCCAGGGCTCCATGTGAGTTGGGATGCGTTCAGTC GCTGCTGCCACTACACAGCGCGGTGGCGGCGTCGAGGATGACATCATGCTTAAGCACTACATCCAGGAGTTGCCGTGCGCTCTCTCAGGGTACACTCTGC TGCACTCTTTTATTGCTTCTCTAG
AA sequence Show only first row Show all	>Potri.001G333800.7 pacid=42793436 polypeptide=Potri.001G333800.7.p locus=Potri.001G333800 ID=Potri.001G333800.7.v4.1 annot-version=v4.1 MAFSSSCRRFISKSSLSSIKSAIRSSNVPKSPSMPTRSATALPSSKPPTSPQFSFSRAPCELGCVQSLLPLHSAVAASRMTSCLSTTSRSCRALSQGTLC CTLLLLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47455			unknown protein		Potri.001G333800 [exp]	0	1
AT1G28395			unknown protein		Potri.011G057300 [exp]	2.23	0.8856
AT2G45860			unknown protein		Potri.002G158300 [exp]	3.87	0.8588
AT4G11060		MTSSB	mitochondrially targeted singl...		Potri.013G011800 [exp]	4.00	0.8465
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.017G065800 [exp]	6.92	0.8591	PHB3.1
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Potri.001G097801 [exp]	6.92	0.8201
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.015G062700 [exp]	8.06	0.7902
AT3G51010			unknown protein		Potri.007G018300 [exp]	10.90	0.7819
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.001G038000 [exp]	11.22	0.7699	RAD23.1
AT3G52040			unknown protein		Potri.001G262000 [exp]	15.87	0.7896
AT1G47278			unknown protein		Potri.009G029400 [exp]	17.32	0.7634

Compare expression of checked genes

Potri.001G333800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.