Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20090 142 / 1e-45 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) AT4G22310 74 / 4e-18 Uncharacterised protein family (UPF0041) (.1) AT4G14695 71 / 3e-17 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2) AT4G05590 70 / 8e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095133 [exp] 140 / 9e-45 AT5G20090 199 / 5e-68 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.015G092500 [exp] 140 / 2e-44 AT5G20090 189 / 7e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.011G023100 [exp] 73 / 8e-18 AT4G22310 205 / 3e-70 Uncharacterised protein family (UPF0041) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025851 [exp] 142 / 3e-45 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Lus10038250 [exp] 142 / 3e-45 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Lus10032564 [exp] 80 / 9e-21 AT4G22310 163 / 5e-54 Uncharacterised protein family (UPF0041) (.1) Lus10023745 [exp] 74 / 4e-18 AT4G22310 206 / 1e-70 Uncharacterised protein family (UPF0041) (.1) Lus10011790 [exp] 73 / 7e-18 AT4G22310 202 / 3e-69 Uncharacterised protein family (UPF0041) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03650 [poplar] [flax] MPC Mitochondrial pyruvate carriers
Representative CDS sequence Show only first row Show all	>Potri.001G333902.1 pacid=42792700 polypeptide=Potri.001G333902.1.p locus=Potri.001G333902 ID=Potri.001G333902.1.v4.1 annot-version=v4.1 ATGAAATTCCTCCGGACTTTTTGGAATAGTCCTATCGGTCCCAGAACAACTCATTTTTGGGGTCCTGTTTTCAACTGGAGCCTTCCTATTGCGGCGTTTG TAGATACAAAGAAACCCCCAGAATTGATATCAGGCAACATGGTTACAGCTATGTGTTTTTATTCAGCAATGTTCATGAGGTTTTCATGGATGGTACAACC ACGCAACTTGCACCTTCTTGCATGCCATATCACAAACGAGACACTGCAGCTTTATCAGCTCTCACGTTGGATGAAGGCTCATCGGTCCACGCCACAAGAG GAAGCTAAACAACTCGAGGAAGCCAAAGAACAATGA
AA sequence Show only first row Show all	>Potri.001G333902.1 pacid=42792700 polypeptide=Potri.001G333902.1.p locus=Potri.001G333902 ID=Potri.001G333902.1.v4.1 annot-version=v4.1 MKFLRTFWNSPIGPRTTHFWGPVFNWSLPIAAFVDTKKPPELISGNMVTAMCFYSAMFMRFSWMVQPRNLHLLACHITNETLQLYQLSRWMKAHRSTPQE EAKQLEEAKEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20090			Uncharacterised protein family...		Potri.001G333902 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052166 [exp]	7.34	0.9007
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	8.66	0.8937
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G190000 [exp]	13.92	0.9024
					Potri.013G031800 [exp]	15.49	0.8894
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.010G094300 [exp]	17.14	0.8510	KUP6.2
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	22.44	0.8618
					Potri.010G253001 [exp]	23.06	0.8552
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Potri.017G051900 [exp]	26.98	0.8967
AT5G06280			unknown protein		Potri.016G072500 [exp]	28.86	0.8760
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	30.14	0.8828

Compare expression of checked genes

Potri.001G333902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.