Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01790 299 / 2e-104 Ribosomal protein L13 family protein (.1.2) AT1G78630 76 / 7e-17 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066000 [exp] 377 / 3e-135 AT3G01790 266 / 3e-91 Ribosomal protein L13 family protein (.1.2) Potri.011G106100 [exp] 80 / 2e-18 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.001G384600 [exp] 80 / 3e-18 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014597 [exp] 302 / 1e-105 AT3G01790 309 / 3e-108 Ribosomal protein L13 family protein (.1.2) Lus10032063 [exp] 303 / 5e-105 AT3G01790 308 / 3e-107 Ribosomal protein L13 family protein (.1.2) Lus10005553 [exp] 78 / 2e-17 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1) Lus10041940 [exp] 66 / 5e-13 AT1G78630 317 / 4e-110 embryo defective 1473, Ribosomal protein L13 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [poplar] [flax] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Potri.001G334000.1 pacid=42789111 polypeptide=Potri.001G334000.1.p locus=Potri.001G334000 ID=Potri.001G334000.1.v4.1 annot-version=v4.1 ATGGCAAGCCAAGCTGCAGCTAGCGCTTTTAATGGAAGCATGAAGAAAGCACATGCTGGCCTCAAACGTATCAATCTGGAAGGTCTACGGTGGAGAGTAT TTGATGCCAAAGGCCAGGTTCTTGGAAGATTAGCATCTCAAATATCAACAGTTATTCAAGGCAAGGATAAGCCAACTTATGCTCCTTATCGTGATGATGG TGATATGTGCGTTGTGCTTAATGCAAAGGATGTCTGTGTTACGGGTAGAAAAATGACGGATAAGTTTTACCGCTGGCATACAGGGTATATAGGCCACCTC AAGGAAAGGAGTTTAAAAGACCAGATGGCCAAGGACCCTACAGAAGTCATCCGAAAAGCTGTTTTGCGTATGCTTCCAAGAAACAAATTGCGTGATGATA GAGATAGGAAACTGAGGATTTTTCCTGACAGTGAGCACCCCTTTGGTGATCAGCCAGTTGAAGCATATGTGATGCCTCCCAGAAAAGTGCGAGAAATGCG ACCTCGTGCTCAAAGAGCCATGATTCGAGCTCAGAAAAAGGCAGAGCAACTGGAACAGGCCGGTAATGATAAGAGAAAAGGCAAGAAGAGAGAAGTTGAA GCAGATTTGACCGAGTGA
AA sequence Show only first row Show all	>Potri.001G334000.1 pacid=42789111 polypeptide=Potri.001G334000.1.p locus=Potri.001G334000 ID=Potri.001G334000.1.v4.1 annot-version=v4.1 MASQAAASAFNGSMKKAHAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPYRDDGDMCVVLNAKDVCVTGRKMTDKFYRWHTGYIGHL KERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFPDSEHPFGDQPVEAYVMPPRKVREMRPRAQRAMIRAQKKAEQLEQAGNDKRKGKKREVE ADLTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01790			Ribosomal protein L13 family p...		Potri.001G334000 [exp]	0	1
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.016G081200 [exp]	1.73	0.9157
AT2G43780			unknown protein		Potri.019G096500 [exp]	2.23	0.9121
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.008G173300 [exp]	12.96	0.8970
AT2G20110	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.001G184800 [exp]	14.89	0.8349
AT3G53740			Ribosomal protein L36e family ...		Potri.011G066000 [exp]	15.62	0.9145
AT1G26880			Ribosomal protein L34e superfa...		Potri.004G029400 [exp]	15.87	0.9031
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	17.32	0.8905
AT2G35790			unknown protein		Potri.010G219000 [exp]	18.11	0.9040
AT3G02560			Ribosomal protein S7e family p...		Potri.006G087900 [exp]	18.76	0.8979
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	21.35	0.8723	CPK20.1

Compare expression of checked genes

Potri.001G334000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.