Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14250 507 / 1e-179 CSN3, FUS11, COP13 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT1G75990 65 / 3e-11 PAM domain (PCI/PINT associated module) protein (.1) AT1G20200 61 / 5e-10 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066300 [exp] 738 / 0 AT5G14250 522 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.004G176600 [exp] 61 / 6e-10 AT1G20200 680 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022337 [exp] 666 / 0 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032065 [exp] 597 / 0 AT5G14250 503 / 7e-177 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10041586 [exp] 543 / 0 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10014595 [exp] 530 / 0 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10005061 [exp] 72 / 2e-13 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10027832 [exp] 70 / 9e-13 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Potri.001G334200.3 pacid=42791737 polypeptide=Potri.001G334200.3.p locus=Potri.001G334200 ID=Potri.001G334200.3.v4.1 annot-version=v4.1 ATGGCTACGGTAGAATCGCTGGTGGCGCAAATCCAAGGGCTATCAAGCAGCGCTGGGGATTTAAGTTTGTTGTTGACTCACTTGAAACAAGCAGATGAGT TTCTGCACAATGAGTCTACTCGGCTTTTGCCTTTTCTAGAACAGCTCGACCCGACTCTTCACTCTCTTGGTTATCTTTATATTTTAGAGGCATGCACTTC TTGGCCAGTTACCAACGACCAAGCGAGAAGACTGGTTTTGATCCTTTCCAGGTTTCTCACATCGTGTGTTGCAGATCAGATTCGTTTGGCGCCTGAAAAG TTCATCGCTGTCTGTAAGAGTTTCAAAGACCAAGTGCTGATGCTTGAAGCACCTATCCGTGGTGTGGTCCCTTTGCTGGAAGCTGTGAAAAAGCTACGCT CCTCCGAACATTTGACTACTTTGCATCCAGATTTTCTTCAACTTTGTTTGTTGGCAAAGTGCTATAAAACTGGTCTTTCCATTCTGGAGGATGATATTTT TGAAGTCGATCAACCAAGGGATTTTTATCTCTATTGTTATTATGGGGGGATGATATGCATTGGACAAAAGCGTTTTCAGAAAGCACTGGAGCTTCTACAC AATGTCGTGACTGCTCCTATGTCTTCTATAAATGCTATAGCTGTTGAAGCATTCAAAAAATATGTATTGGTTTCTCTAATTTACAATGGACAGCAGTTCT CTACCAGTCTACCTAAGTACACTTCTTCAGCAGCTCAGAGGAATCTAAAGACCATATGTCAGCCCTATATAGAATTGGCAAATACTTATAGCATTGGAAA AATTTCAGAATTAGAGCCATACATTCAGACAAACAGAGAAAAATTTGACAGCGACAATAATCTTGGATTGGTGAAGCAGGTTGTAACATCAATGTATAAG AGAAACATTCAGAGATTGACGCAAACATATTTGACTCTTTCCCTCCAAGATATAGCGAACACTGTGCAACTCAGCAGTCCTAAAGAGGCAGAAATGCATG TGCTTCAAATGATCCAAGATGGTGAGATATATGCAACAATCAACCAAAGAGATGGTATGGTTAGATTCTTAGAGGATCCGGAGCAATATAAAACCTGTGA GATGATTGAGCATATTGATTCTTCTATTCAGAGGATAATGACACTGTCAAAGAAGCTGACCGCAATGGATGAACTCATATCATGCGATCCTTTGTACTTG GCAAAGGTTGGAAGAGAGCGTCAGAGATTTGACTTTGATGATTTTGACCCTGTTCCACAGAAATTCAACATATAA
AA sequence Show only first row Show all	>Potri.001G334200.3 pacid=42791737 polypeptide=Potri.001G334200.3.p locus=Potri.001G334200 ID=Potri.001G334200.3.v4.1 annot-version=v4.1 MATVESLVAQIQGLSSSAGDLSLLLTHLKQADEFLHNESTRLLPFLEQLDPTLHSLGYLYILEACTSWPVTNDQARRLVLILSRFLTSCVADQIRLAPEK FIAVCKSFKDQVLMLEAPIRGVVPLLEAVKKLRSSEHLTTLHPDFLQLCLLAKCYKTGLSILEDDIFEVDQPRDFYLYCYYGGMICIGQKRFQKALELLH NVVTAPMSSINAIAVEAFKKYVLVSLIYNGQQFSTSLPKYTSSAAQRNLKTICQPYIELANTYSIGKISELEPYIQTNREKFDSDNNLGLVKQVVTSMYK RNIQRLTQTYLTLSLQDIANTVQLSSPKEAEMHVLQMIQDGEIYATINQRDGMVRFLEDPEQYKTCEMIEHIDSSIQRIMTLSKKLTAMDELISCDPLYL AKVGRERQRFDFDDFDPVPQKFNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.001G334200 [exp]	0	1
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.003G033700 [exp]	2.44	0.8148	UBP6.1
AT2G34970			Trimeric LpxA-like enzyme (.1)		Potri.005G045200 [exp]	3.46	0.8506
AT1G44960			SNARE associated Golgi protein...		Potri.001G070800 [exp]	12.24	0.7719
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Potri.006G227100 [exp]	25.09	0.7772
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Potri.003G171900 [exp]	29.12	0.7513
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Potri.001G304000 [exp]	37.41	0.7751
AT1G15860			Domain of unknown function (DU...		Potri.018G112200 [exp]	37.50	0.7743
AT2G20420			ATP citrate lyase (ACL) family...		Potri.014G195700 [exp]	39.29	0.8026
AT5G60390			GTP binding Elongation factor ...		Potri.008G043100 [exp]	41.56	0.8039	ADR12.3
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Potri.009G005900 [exp]	42.35	0.7447

Compare expression of checked genes

Potri.001G334200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.