Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01780 1858 / 0 TPLATE ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014599 [exp] 1923 / 0 AT3G01780 1910 / 0.0 ARM repeat superfamily protein (.1) Lus10032067 [exp] 1923 / 0 AT3G01780 1922 / 0.0 ARM repeat superfamily protein (.1) Lus10014611 [exp] 102 / 1e-25 AT3G01780 82 / 2e-19 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G334300.2 pacid=42792499 polypeptide=Potri.001G334300.2.p locus=Potri.001G334300 ID=Potri.001G334300.2.v4.1 annot-version=v4.1 ATGGACATTCTTTACGCTCAGATCCAAGCAGACCTCCGTTCAAATGACGCTCTCCGCCAGACTGGCGCACTTCTCCAAGCTCTCCAGCAATCCGCAGCCG GTCGTGACATTTCTATCCTCGCCAAATCCGCCGTTGAAGAGATCGTCGCCTCTCCTGCCTCCGCAGTCTGTAAGAAACTCGCTTTCGACTTAATCCGTTC CTCTCGCCTCACCGCCGATCTCTGGGACACTGTCCTCTCCGGTATCCGCTCCGATCTCCACTTCCCTGATCCCGACGTCACTGCTGCTGCTATATCCATC CTCGCTGCATTGCCTTCTCATGCTCTCTCCAAGCTTATTACCGATTCCAACGCGGAAATATCTGGTTGTTTTGATTCGCAGAGTGATAATTTGAGATTCT CGATTACTGAAACCCTAGGCTGTGTTTTAGCACGTGATGATTTGGTTACGCTGTGTGAGAATAATGTGAATTTGTTAGATAAGGTCTCGAATTGGTGGGT GAGGATGGGGGGGAACATGTTGGATAAATCGGATGCGGTTTCGAAAGTTGCCTTTGAATCAGTTGGGAGGTTGTTTCAAGAGTTTGACTCGAAGAGGATG AGTCGGTTAGCGGGGGATAAGTTAGTTGACAGTGAGAATTCATTGGCGATTAGGTCGAATTGGGTCTCTTCAATGGTGGATTTTGTGTGGAAGAGAAGGA ATGCGTTGATGTCGAGATCATTGATCTTACCAGTAGAGACTTTTAGGGCTACGGTTTTTCCGCTTGTGTTTTCAGTGAAGGCAGTGGCATCTGGGAGTGT GGAGGTGATTAGGAAGCTTTCGAAAGCAGGAACAGGCAGTGGTGTTAATGGGAGTGTTGTGGACTCGAATGCAGAGAGGTTGGTTGGGGTTTCGGATGTG GTCACACACTTGGCGCCGTTTTTGGTGTCATCGTTGGATCCAGCTTTGATTTTTGAGGTGGGGATTAATATGTTGTACTTGGCTGATGTGCCTGGAGGGA AGCCAGAGTGGGCTTCACAGTCTATTATTGCAATTTTGACACTTTGGGATAGGCAAGAGTTTTCTTCTGCAAGGGAGAGTATTGTTAGAGCTGTTGTTAC AAATCTGCACCTACTTGATCTTCATATGCAGGTTTCATTGTTTAAGAAGCTGCTGCTTATGGTGAGAAATCTGAGGGCTGAATCAGACCGTATGCATGCT TTAGCTTGCATTTGTAGAACAGCACTCTGTGTTGACCTTTTTGCTAAAGAAAGTGTTAGAAGAGGTCAGAAACCTCTTGCTGGCACTGATATTGCCTCTC TTTTCGAGGATGCAAGGATAAGAGATGATCTCAATAATGTGAGAAGTAAAAGCTTATTTAGGGAGGAGTTGGTGGCATCACTAGTGGAAAGTTGCTTTCA GTTGTCTCTACCTTTGCCTGAACAAAAGAGCTCAGGAATGGAGAGCAGAGTTATTGGAGCTTTGGCTTATGGAACTGGTTATGGTGCATTAAACTGGACA GAGCCAGCTTTGGAAGTTGTTGAAGTGTGCAGGCCTTGTGTCAAATGGGATTGTAATGGCAGGACATATGCAGTTGATTGCTATTTGAAGTTGCTTGTGA GGTTGTGCCATATATATGATACCAGGGGAGGAGTGAAAACTATTAAAGATGGTGCTTCTCAAGATCAAATCTTGAATGAGACGAGGTTGCAAAATTTGCA ACGTGAACTTGTGAAAGATCTACGAGAGGTAAACACCCCAAGAATATGTGCCCGTCTTATTTGGGCTATTGCTGAACACATAAATCTAGAAGGTTTGGAT CCACTTCTAGCTGATGATCCTGATGATCCACTGAACATTATTATATCAAATATCCACAAGGTTCTATTTAATGTTGATTCGTCTGCAAATACATCAAATA GGCTTCAAGATGTTCAGGCAGTTCTTTTAAGTGCTCAGAGATTGGGATCACGAAGCCTTAGGGCTGGCCAGTTACTGTCTAAAGAGCTTGAAGAGTTTAG AAACAATGGTTTGGCTGATTCGGTCAACAAGCACCAATGCCGCTTGATATTGCAGAGGATTAAATATGTTCAAAATCATCCTGATAGCAGGTGGACTGGT GTTAGCGAAGCCAGAGGAGACTACCCATTTAGCCACCACAAACTTACTGTTCAGTTTTATGAAGCAGCTGCTGCTCAGGACAGAAAATTGGAAGGATTAG TTCACAGGGCTATTTTAGAGCTTTGGAGACCAGATCCAAGTGAATTAACTATTTTGTTGACAAAAGGAATTGACTCTCCACTGCTCAAGCTTCAGCCTAC TGCACATACTTTGACTGGTAGTAGCGATCCTTGCTATGTTGAAGCTTATCATTTGGCAGACTCGGGCGATGGTAGGATTACTCTTCATCTAAAGGTTTTA AATTTGACTGAACTTGAACTGGATAGGGTGGATATTCGAGTTGGGTTATCCGGTGGATTATATTTTATGGATGGATCTACTCAAGCTGTGCGACAGTTGC GTAATCTTGTTTCACAGGATCCAGTACTTTGCAGTGTTACATTGGGTGTATCCCATTTTGAGAGATGTGCCCTCTGGGTTCAAGTCTTATACTACCCATT CTCTGGAAGGGGTGCAATAAATGATGGTGATTATGCTGAGGAGGATCAACAGATCATGAAACAGAAGAGAAGCTCGAGACCAGAACTAGGAGAACCTGTG ATTTTGAGGTGCCAGCCTTACAAAATTCCGCTGACTGAACTCCTTTTGCCACATAAAATTTCGCCTGTTGAGTTCTTCCGCTTATGGCCTAGTTTACCAG CTGTAGTAGAGTATACTGGCACATACATTTATGAAGGAAGTGGCTTCAAGGCCACTGCTGCGCAGCAATATGGTTCTTCTCCTTTCCTCGGTGGACTAAA ATCCTTGTCTTCCAAGCCTTTCCACAGGGTTTGTTCACACATCATCCGGACAGTGGCAGGGTTTCAGCTTTGCTATGCTGCCAAAACTTGGTATGGAGGC TTCTTGGGCATGATGATATTTGGAGCCAGTGAAGTGAGCAGAAATGTTGATCTGGGTGACGAAACAACTACGATGATCTGCAAATTTGTTGTCCGAGCAT CTGATGCGTCAATCACAAAGGAGATTGAAGCAGACTTGCAGAGCTGGTTGGATGACCTTGCTGATGGAGGTGTGGAGTACATGCCTGAAGATGAAGTGAA AGAGGCTGCTGCTGAAAGGCTTAGGATTTCAATGGAAAGAGTAGCCTTGTTTAAGGCAGCCCAACCACCACCCAAAACTCCAAAATCTGATGATGAAGAG GAGGAGGAGAAAGAGGATGATGAGGAAAAGAAAGAAAATGAGAATGATGGCGATAAGAAAGAGCACAAGGAAGATGGTAAAAAACCAAAAGGAACCCTGT CAAAATTAACCGCAGAGGAGGTTGAGCACATGGCTCTTCAAACAGCCGTGCTCCAAGAATGGCACGTTCTGTGTAAAGAAAGAAGCTCGACAGTGAATTA A
AA sequence Show only first row Show all	>Potri.001G334300.2 pacid=42792499 polypeptide=Potri.001G334300.2.p locus=Potri.001G334300 ID=Potri.001G334300.2.v4.1 annot-version=v4.1 MDILYAQIQADLRSNDALRQTGALLQALQQSAAGRDISILAKSAVEEIVASPASAVCKKLAFDLIRSSRLTADLWDTVLSGIRSDLHFPDPDVTAAAISI LAALPSHALSKLITDSNAEISGCFDSQSDNLRFSITETLGCVLARDDLVTLCENNVNLLDKVSNWWVRMGGNMLDKSDAVSKVAFESVGRLFQEFDSKRM SRLAGDKLVDSENSLAIRSNWVSSMVDFVWKRRNALMSRSLILPVETFRATVFPLVFSVKAVASGSVEVIRKLSKAGTGSGVNGSVVDSNAERLVGVSDV VTHLAPFLVSSLDPALIFEVGINMLYLADVPGGKPEWASQSIIAILTLWDRQEFSSARESIVRAVVTNLHLLDLHMQVSLFKKLLLMVRNLRAESDRMHA LACICRTALCVDLFAKESVRRGQKPLAGTDIASLFEDARIRDDLNNVRSKSLFREELVASLVESCFQLSLPLPEQKSSGMESRVIGALAYGTGYGALNWT EPALEVVEVCRPCVKWDCNGRTYAVDCYLKLLVRLCHIYDTRGGVKTIKDGASQDQILNETRLQNLQRELVKDLREVNTPRICARLIWAIAEHINLEGLD PLLADDPDDPLNIIISNIHKVLFNVDSSANTSNRLQDVQAVLLSAQRLGSRSLRAGQLLSKELEEFRNNGLADSVNKHQCRLILQRIKYVQNHPDSRWTG VSEARGDYPFSHHKLTVQFYEAAAAQDRKLEGLVHRAILELWRPDPSELTILLTKGIDSPLLKLQPTAHTLTGSSDPCYVEAYHLADSGDGRITLHLKVL NLTELELDRVDIRVGLSGGLYFMDGSTQAVRQLRNLVSQDPVLCSVTLGVSHFERCALWVQVLYYPFSGRGAINDGDYAEEDQQIMKQKRSSRPELGEPV ILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAVVEYTGTYIYEGSGFKATAAQQYGSSPFLGGLKSLSSKPFHRVCSHIIRTVAGFQLCYAAKTWYGG FLGMMIFGASEVSRNVDLGDETTTMICKFVVRASDASITKEIEADLQSWLDDLADGGVEYMPEDEVKEAAAERLRISMERVALFKAAQPPPKTPKSDDEE EEEKEDDEEKKENENDGDKKEHKEDGKKPKGTLSKLTAEEVEHMALQTAVLQEWHVLCKERSSTVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	0	1
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	2.00	0.9322
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	3.00	0.9287
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	4.35	0.9368	Pt-FLA14.7
AT5G39380			Plant calmodulin-binding prote...		Potri.017G090200 [exp]	6.70	0.9067
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	7.74	0.9121
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.013G113700 [exp]	8.66	0.9023
AT5G17910			unknown protein		Potri.013G068800 [exp]	9.16	0.8858
AT3G07010			Pectin lyase-like superfamily ...		Potri.014G178100 [exp]	10.00	0.8627
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	11.13	0.8758
AT5G42090			Lung seven transmembrane recep...		Potri.003G147700 [exp]	11.40	0.9039

Compare expression of checked genes

Potri.001G334300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.