Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27250 154 / 3e-44 unknown protein AT5G50360 134 / 1e-36 unknown protein AT5G40800 125 / 1e-33 unknown protein AT5G40790 125 / 3e-33 unknown protein AT3G48510 120 / 2e-31 unknown protein AT5G63350 118 / 9e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091900 [exp] 147 / 3e-41 AT5G50360 221 / 8e-71 unknown protein Potri.012G094400 [exp] 140 / 1e-38 AT5G50360 233 / 3e-75 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032077 [exp] 90 / 2e-20 AT3G27250 127 / 3e-35 unknown protein Lus10014610 [exp] 87 / 2e-19 AT3G27250 119 / 5e-32 unknown protein Lus10018671 [exp] 46 / 2e-05 AT1G27461 306 / 1e-102 unknown protein Lus10007752 [exp] 44 / 0.0001 AT1G27461 300 / 6e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G334500.1 pacid=42791605 polypeptide=Potri.001G334500.1.p locus=Potri.001G334500 ID=Potri.001G334500.1.v4.1 annot-version=v4.1 ATGGATGGTTGTAATGGCTGGCATGTGATAAGAGGAGCTGCTGCTGACGCTTGTGGTCGTGCTGGTGCTCAGGATAAAACGATTATTAACCGGATAATGC ATAGATTCCGACCGATTGCACCGAAGCCGGCTGCCGGTGCTGATCTAGACTCTAGCTCTTCAGTGATTGGCAACAAAGAATTGGTAGCTTTCAAGACAAC TAGAAGAAAGAGAAAGTACGTTAGGGTTTGTAAGAGTAATAAATTGAAGAAAAGCAAAAGGGTGCCGGGAGTACCATCGTCAGATCAAGAAAAGGAAAGA GAAGGGGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGTGATTTCAGCAGTGTTGTTACTTTACAGTTATTACCAGAGAGAAGTGAATCGAAGGATGATG AGTCGCAATTAGAAAGAATGGGAAAGACATGGTGCAATAATGATAATTCTCAAGATCTTGCCGTAGATAATATTAAAGAATATGTCGATGATCAAGAAAA GCAAGAACAGCCCATGTGTTTTAAGTTCAAGTTAAAGCAGCCCATGATTGAGGGTTATGGTAAGCCAGATCAGATGTTCGTGATGCTTCCTCAAAAGAGG GAAACTACAGTAGCGGAATCCTGGGTGACGGTAGAGTGCGTGACAGACATATACAGTACATGCATGGATGGTAGAGCTATATTATTAGGGTGTACAGACG TGGAGAGAATGAGGAATCTGGAGGGGGACACGTGTCCCGGATTCATATCGGACGGTTTGAATCACGTACAATGGATAAACTGGGCTTACAAGAAGATGGT GGAGATGGTAACGAAGGAAGATAGTAAAGAGAGAGTACAGCTGTATGATACAGTTCCAGAAGTAATGGTTTGGTTGGTGATAAAGGAAAAGTTGTTGCCT TTTGTGGACTGTGCCTCTGCGTTTAGCTGCTGGGTTAGGTTACAGAACTCGTGGCAGAAAGAGAAGGGTTCACAGACGGTTGTTCCTTGTGATGTTTGGA GAATGGATTGTGGAGGGTTTGCATGGAGACTGGATATTGACTCTGCACTCAGTTTGGGCCGTTGA
AA sequence Show only first row Show all	>Potri.001G334500.1 pacid=42791605 polypeptide=Potri.001G334500.1.p locus=Potri.001G334500 ID=Potri.001G334500.1.v4.1 annot-version=v4.1 MDGCNGWHVIRGAAADACGRAGAQDKTIINRIMHRFRPIAPKPAAGADLDSSSSVIGNKELVAFKTTRRKRKYVRVCKSNKLKKSKRVPGVPSSDQEKER EGEGEGEGEGEGGDFSSVVTLQLLPERSESKDDESQLERMGKTWCNNDNSQDLAVDNIKEYVDDQEKQEQPMCFKFKLKQPMIEGYGKPDQMFVMLPQKR ETTVAESWVTVECVTDIYSTCMDGRAILLGCTDVERMRNLEGDTCPGFISDGLNHVQWINWAYKKMVEMVTKEDSKERVQLYDTVPEVMVWLVIKEKLLP FVDCASAFSCWVRLQNSWQKEKGSQTVVPCDVWRMDCGGFAWRLDIDSALSLGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27250			unknown protein		Potri.001G334500 [exp]	0	1
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	2.44	0.8870
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	3.00	0.8345	ABF1.1
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.002G125400 [exp]	5.29	0.8427	ABF2.2
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.008G059200 [exp]	8.24	0.8196
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	9.79	0.8444	Pt-ATHB.5
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	13.41	0.8110	Pt-ABF2.1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	13.85	0.8623
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.001G245200 [exp]	16.24	0.8307
AT5G67400		RHS19	root hair specific 19 (.1)		Potri.007G053400 [exp]	16.61	0.8052
AT3G55070			LisH/CRA/RING-U-box domains-co...		Potri.008G047300 [exp]	18.16	0.8312

Compare expression of checked genes

Potri.001G334500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.