Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 459 / 2e-157 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 458 / 2e-157 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 410 / 1e-138 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 410 / 1e-138 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 361 / 3e-119 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 310 / 8e-100 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37370 301 / 3e-96 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37320 298 / 3e-95 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT2G23190 295 / 2e-93 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT4G37340 292 / 5e-93 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037500 [exp] 520 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 503 / 1e-174 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 495 / 5e-172 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.004G106600 [exp] 491 / 2e-170 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.009G108600 [exp] 475 / 2e-164 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 461 / 2e-158 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 459 / 1e-157 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 458 / 5e-157 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 451 / 2e-154 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038200 [exp] 578 / 0 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 575 / 0 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 532 / 0 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025904 [exp] 530 / 0 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 503 / 1e-174 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10022762 [exp] 498 / 1e-172 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038178 [exp] 486 / 4e-168 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 481 / 5e-166 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 474 / 6e-163 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 472 / 6e-163 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G334700.1 pacid=42788987 polypeptide=Potri.001G334700.1.p locus=Potri.001G334700 ID=Potri.001G334700.1.v4.1 annot-version=v4.1 ATGGACTTCTCTTTTCATCTATTAGCGGTTTCAACAGTTTTAGCATTAGTTCTGTGGTACACTTTACGCAGAGTGAGAGAGAGTAGGCGCAAAACTGAAA AGGGTTTGCAGCCACCGGAACCATCTGGTGCGTTGCCACTTATAGGCCATCTCCATCTATTAGGGGCACAAAAGACGCTTGCTCGAACATTGGCTGCCAT GGCAGATAAATATGGTCCCATCTTCACAATTCGGCTGGGAAAGCACCCTACAGTTGTGGTTAGCAATCTTGAGGCAATTAAGGAGTGCTTCACAACACAT GATAGGATTTTATCATCCAGGCCAAGATCAAGTCACGGGGAGCACCTAAGCTACAATTATGCAGCATTTGGTTTCAATAATTCGGGTCCTTTTTGGCGTG AAATGCGTAAGATAGTTACGATTCAACTCCTTTCCAGCCATAGGCTCAAGTCTTTGAGGCATGTTCAGGTCTCGGAGGTGAATACCTTGATCAATGACTT GTACTTGCTCAGTAAGAGCAATAAGCAAGGCTCGACCAAGATAGACATTAGTGAATGTTTTGAGCGAATGACAATAAATATGATCACAAGAATGATTGCA GGAAAGAGATACTTCAGTAGTACGGAAGCTGAAAAAGAAGATGAAGGAAAACGTATTGGAAAACTCATGAAGGAGTTCATGTATATTTCCGGTGTCTTTG TCCCTTCGGATGTAATTCCATTTCTTGGATGGATGAATAACTTTCTTGGATCCGTGAAAACTATGAAGCGTCTTTCGAGGGAACTGGATTCCCTTATGGA AAGTTGGATTCAAGAACATAAATTGAAGAGGCTCGAGAGTACTGAGAACACTAACAAAATGGAGGACGACGACTTCATAGATGTGATGCTATCCCTACTG GATGATTCCATGTTTGGCTATTCTCGCGAAACAATTATCAAGGCAACAGCAATGACTCTTATCATAGCAGGTGCCGATACCACATCTATCACCCTGACAT GGATCTTATCCAATTTGTTGAACAATAGACGGTCATTGCAGCTTGCCCAAGAAGAGCTAGACCTCAAAGTTGGCAGGGAAAGATGGGCAGAGGACTCTGA TATTGGGAACTTAGTGTACATCCAGGCCATTATCAAAGAGACATTGCGCTTGTACCCACCAGGTCCTTTGTCAGTCCCACATGAGGCAACAAAAGATTTT TGTGTTGCCGGATATCACATACCAAAGGGCACTCGTTTGTTTGCAAATTTATGGAAGCTGCATCGGGACCCAAATTTGTGGTCTAATCCTGATGAATATA TGCCAGAAAGATTTCTCACTGATCACGCAAATGTAGATGTTTTAGGTCACCATTTTGAGTTGATTCCATTTGGCTCGGGGAGACGATCTTGTCCTGGTAT CACATTTGCATTGCAAGTGCTCCATTTGACGTTTGCCAGATTGCTTCAGGGTTTTGACATGAAAACACCAACGGGTGAATCAGTGGACATGACTGAGGGC GTAGCTATAACCTTGCCTAAGGCGACTCCTTTGGAAATTCAGATCACCCCACGCCTCTCTCCTGAACTCTACTATGAGTGCTAA
AA sequence Show only first row Show all	>Potri.001G334700.1 pacid=42788987 polypeptide=Potri.001G334700.1.p locus=Potri.001G334700 ID=Potri.001G334700.1.v4.1 annot-version=v4.1 MDFSFHLLAVSTVLALVLWYTLRRVRESRRKTEKGLQPPEPSGALPLIGHLHLLGAQKTLARTLAAMADKYGPIFTIRLGKHPTVVVSNLEAIKECFTTH DRILSSRPRSSHGEHLSYNYAAFGFNNSGPFWREMRKIVTIQLLSSHRLKSLRHVQVSEVNTLINDLYLLSKSNKQGSTKIDISECFERMTINMITRMIA GKRYFSSTEAEKEDEGKRIGKLMKEFMYISGVFVPSDVIPFLGWMNNFLGSVKTMKRLSRELDSLMESWIQEHKLKRLESTENTNKMEDDDFIDVMLSLL DDSMFGYSRETIIKATAMTLIIAGADTTSITLTWILSNLLNNRRSLQLAQEELDLKVGRERWAEDSDIGNLVYIQAIIKETLRLYPPGPLSVPHEATKDF CVAGYHIPKGTRLFANLWKLHRDPNLWSNPDEYMPERFLTDHANVDVLGHHFELIPFGSGRRSCPGITFALQVLHLTFARLLQGFDMKTPTGESVDMTEG VAITLPKATPLEIQITPRLSPELYYEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.001G334700 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	1.41	0.9274
AT3G07565			Protein of unknown function (D...		Potri.007G132700 [exp]	1.41	0.9115
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.018G009200 [exp]	2.00	0.9014	Pt-ATCNGC14.1
AT1G10690			unknown protein		Potri.010G045200 [exp]	2.44	0.9090
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	8.48	0.8842
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	10.48	0.8976
					Potri.012G082300 [exp]	10.95	0.8737
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.002G021500 [exp]	13.26	0.8659	CYP1.2
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Potri.006G133300 [exp]	14.07	0.8841
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.004G175000 [exp]	15.19	0.8575	UBC.11

Compare expression of checked genes

Potri.001G334700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.