Plant FIBer expression Database

Potri.001G334900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59440 313 / 5e-108 ATTMPK.2, ATTMPK.1, ZEU1 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035500
[exp]
339 / 2e-116 AT5G59440 345 / 1e-118 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Lus10027801
[exp]
321 / 9e-112 AT5G59440 330 / 4e-116 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF02223 Thymidylate_kin Thymidylate kinase
Representative CDS sequence
>Potri.001G334900.1 pacid=42787801 polypeptide=Potri.001G334900.1.p locus=Potri.001G334900 ID=Potri.001G334900.1.v4.1 annot-version=v4.1
ATGATACATGCCTGCTATTTTACCAAGGCTTTAAATTTGAGGGCTTTAACAGCAAGGAGGTTATTGAGTTTTGGCCTTGACCATCCCAACAAGTGTTGTG
TTAGCTCAATAAGAATGGAATCCAGTAGTAATTGCAACCTGAGGGCTAGCAGCAGTGAGTCAAGAGGTGCCTTGATAGTTTTAGAAGGATTGGATCGTAG
CGGAAAGACTTCACAATCTAGTAGATTACTGTCTTACTTGGAGGGACTAGGGCATTCGACTGAATTATGGAGATTTCCTGATAGGAGTACTAGTGTTGGA
CAAATGATATCTGCATATCTTTCGAACAAGTCACACTTGGATGACCGCACGATCCATCTCCTTTTCAGTGCAAATAGATGGGAAAAGAGATCATTGATGG
AAACTCAACTGAAAAATGGAACCACTCTTGTTGTTGACCGTTATTCTTATTCTGGAGTGGCCTTTTCATCTGCAAAAGGACTTGATATTGAATGGTGCAA
GGCACCAGAGGTTGGCTTGCTGGCTCCGGATATTGTTTTGTACCTTGACATACCACCAGAGAAAGCTGCTGAAAGAGGAGGCTACGGAGGTGAAAGATAC
GAGCAACTTGAGTTTCAGAAAAAAGTTGCAAAATGCTATCAGGCCCTGTGTGATTCCTCCTGGAAGGTCATTGATGCTTGCCAACCCATTGAAGATATTG
AGAAACAACTGCAAGATGCTGTCCTGGATCATGTCATGGCATGTGAAAGAGGGAGACCCCTCTCCTATCTTTGGCCTCGTTAA
AA sequence
>Potri.001G334900.1 pacid=42787801 polypeptide=Potri.001G334900.1.p locus=Potri.001G334900 ID=Potri.001G334900.1.v4.1 annot-version=v4.1
MIHACYFTKALNLRALTARRLLSFGLDHPNKCCVSSIRMESSSNCNLRASSSESRGALIVLEGLDRSGKTSQSSRLLSYLEGLGHSTELWRFPDRSTSVG
QMISAYLSNKSHLDDRTIHLLFSANRWEKRSLMETQLKNGTTLVVDRYSYSGVAFSSAKGLDIEWCKAPEVGLLAPDIVLYLDIPPEKAAERGGYGGERY
EQLEFQKKVAKCYQALCDSSWKVIDACQPIEDIEKQLQDAVLDHVMACERGRPLSYLWPR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G59440 ATTMPK.2, ATTMP... ZEUS1, ARABIDOPSIS THALIANA TH... Potri.001G334900
[exp]
0 1
AT3G06240 F-box family protein (.1) Potri.001G318300
[exp]
5.19 0.6495
AT1G42440 unknown protein Potri.005G250100
[exp]
9.11 0.6923
AT3G07050 NSN1 nucleostemin-like 1, GTP-bindi... Potri.002G241100
[exp]
13.03 0.6888
AT1G72810 Pyridoxal-5'-phosphate-depende... Potri.001G199100
[exp]
15.16 0.6182
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.009G130600
[exp]
18.86 0.6481
AT5G19820 EMB2734 embryo defective 2734, ARM rep... Potri.001G004800
[exp]
19.10 0.6443
AT4G32640 Sec23/Sec24 protein transport ... Potri.005G049100
[exp]
20.97 0.6289 CEF.1
AT5G14600 S-adenosyl-L-methionine-depend... Potri.018G120500
[exp]
21.49 0.6335
AT1G47870 E2F_DP ATE2FC, ATE2F2,... ARABIDOPSIS THALIANA HOMOLOG O... Potri.002G023400
[exp]
30.46 0.5425 Pt-E2FC.1,E2Fc
AT4G19550 zinc ion binding;transcription... Potri.001G082800
[exp]
42.07 0.6424

Potri.001G334900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.