Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GTE903
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27260 459 / 8e-151 GTE8 global transcription factor group E8 (.1.2) AT5G14270 429 / 1e-140 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G63320 368 / 2e-113 NPX1 nuclear protein X1 (.1.2.3) AT3G01770 327 / 4e-102 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT1G73150 141 / 7e-36 GTE3 global transcription factor group E3 (.1) AT1G06230 141 / 1e-34 GTE4 global transcription factor group E4 (.1.2.3) AT1G17790 135 / 1e-33 DNA-binding bromodomain-containing protein (.1) AT5G65630 132 / 4e-32 GTE7 global transcription factor group E7 (.1) AT5G46550 127 / 8e-31 DNA-binding bromodomain-containing protein (.1) AT2G34900 116 / 7e-28 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G094300 [exp] 555 / 0 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.015G091800 [exp] 546 / 0 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.009G080000 [exp] 152 / 8e-39 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.011G096400 [exp] 147 / 2e-37 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G355300 [exp] 142 / 2e-35 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.013G118900 [exp] 139 / 4e-34 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 137 / 2e-33 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.011G077100 [exp] 135 / 3e-33 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.001G376400 [exp] 132 / 5e-33 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014609 [exp] 492 / 3e-164 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10032076 [exp] 456 / 7e-150 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10017661 [exp] 139 / 6e-34 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 139 / 1e-33 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 138 / 1e-33 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10011989 [exp] 135 / 3e-33 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10002784 [exp] 133 / 2e-32 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10020470 [exp] 127 / 5e-32 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10007096 [exp] 130 / 2e-31 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 124 / 2e-29 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0665 [poplar] [flax] BET PF17035 [poplar] [flax] BET Bromodomain extra-terminal - transcription regulation
Representative CDS sequence Show only first row Show all	>Potri.001G335000.5 pacid=42788535 polypeptide=Potri.001G335000.5.p locus=Potri.001G335000 ID=Potri.001G335000.5.v4.1 annot-version=v4.1 ATGATGGCAAAGAAAGGTAAATTCAGTGGAAGGTATCATAGAAGTAGATTTCACACAGCAGGTGAAATTGAGGGTTCTGCTAGTTCAGGAAGGATTGACA CGGAGATTACAGTATCTGAGGGTTCTAGTGCTCCTGGGCGGAAATTTAGCAAGTTAAATTCCAACAAAGAGGACACTTTTGGTGTCCCTGTGCAGATATT TTCTCCATCGCACCTGTCACCATCTGAAAGGAAGGATTTAGAACAAAGGTTGAGATGGGAACTTGAACAAGTAAGGAATCTCCAAAAGAGAGTTGATTTA CAGAGAACAAATGGTGTTACACTGTCATCTTCCAGTGACATTCTTAGTTGTAGCAATGGAACAAATAGGCCTCGGATAGAAACTTTTAGGAAGTCTTCGG TTATGACCTCTGGGCCTGGGAAGAAAGTGAATCTGACAGGACAGTCACGTGTATGGAATAGGGGTAATTCAGGAAGGTTTAAGTCTGCAAAACAAGTTTC AAGACAGACAACACCAATCACTCCAAATATAATATTGATGAAACAGTGTGAGACGCTGTTGAAACGGTTGATGTCTCATCAATACGGTTGGGTCTTCAAC AGCCCAGTTGATATTGTGAAGTTGAACATCCCGGATTATTACACTGTTATTAAGAATCCAATGGATTTGGGAACCATAAAGAGCAAGATATCTTCTGGTG CTTACTCAAGCCCTTTGGAGTTTATGGCTGATGTGAGGCTTACTTTCAAAAATGCTATGGTGTACAATCCACAAGGGTCTGATGCCTACATTATGGCAGA TACTCTTAATAAATTTTTTGAAATGAGATGGAAAGCTATTGAGAAGAAATTACCAAGGGCTGGTGGTGAAGTTTTGCAGGAAAATTCAGGTCCTCACGAA GACTTTGAAACTGCTGAAACATCTCCTGCAAAAAAGAGAAAAGTAACCTCTTTCCAACATGACATTATGCCAGAGCCTGGAAAGCGAGGAATGACAGATG AAGAGAGGCTCAATTTAGGTAGAGAATTGGAGTCTTTGTTGGGAGAAATGCCTGTAAATATTATTGATTTCTTGAGGGAACATTGTTCAAGTGGGAGGCA TGGTGGAGAGGAGGAAATTGAGATAGATATTGATGAACTCAGTGATGACACCTTGTTCACATTGCGGAAGCTCCTAGATGACTATTTGCAAGAGAAACGA AAGAATCAAACCAGAGGGGAACCTTGTGAAATAGAGCTATTGAATGAATCTGGGCCAAGCAATTCATCCATGCAACAGAAAAAAGGGAATGACCTGGGAG ATGAGGAAATTGACATTGGTGGCAACGGGCCTCCTGTTTCAAGCTATCAACCTGTGGAGATAGAAAAGGAAAAGGATACAGGCCATAAGAGCAGCAAAAT CAGCTCAGATAGCTCCAGTGATTCAGATTCTGGCAGTTCTTCTCAAAGTGAATCAGATAATGCAAAAGTTTCAAGTCCACCAAATGCATCAAGGGTTTCT GAAACCTTGGTTTGTGGAGCTCGATTAGGCAACAAAACAAATGCTGGTGCTCAGCTCGAGAGGAATCAATCTGTCAGTGGTTTGGATCAGCTCGAACAGA CTTCCCAGGAAAAGCTGAGTTCTGTTGAGTCTGATTGCCAGCAAGATGGGGAAAGTGCTCCAAGTGATAGCCAGGTCTCTCTTGAGAAGCGTATTAGGCA TGCTTTGATCAAGAACCGTTTTGCCGATACCATATTAAAAGCTAAAGAGAAGTCACTTTCACAGGGTGACAAGGGGGATCCTCAGAAATTGCAGCGGGAG AGGGAGGAACTTGAACTGCATAAAAAGAAAGAAAAAGCGAGGTTGCTTGCTGAAGCACAAGCTGCCGAAGATGCTCAAAGGCAAGCCGAGGCAGCAGCTG CGGCTGAGGCTAGACGGAAGAGGGAGCTTGAAAGAGAGGCAGCGCGACAGGCGTTGCTGAAGATGGAAAAGACTGTTGAAATTAATGAGAACTCTCAGTT TCTTGAAGACCTGGAAATGCTCAGGGTTGTCCCTGCTGAGCATGTACCAATCTCTGTAGATGAGACGAGCCCAGATCCCTCACAAGATGGCTTGGGTGGG TTCAAGTTTGGGGCGTGTAACCCCTTAGAACAACTTGGTTTGTTCATGAAAGATGATGAAGAGGAGGAAGAGGGTGAACCGTTAAATGTTTTAAATCCTT TAAATGAAGTAGAAGAGGGAGAGATTGACTGA
AA sequence Show only first row Show all	>Potri.001G335000.5 pacid=42788535 polypeptide=Potri.001G335000.5.p locus=Potri.001G335000 ID=Potri.001G335000.5.v4.1 annot-version=v4.1 MMAKKGKFSGRYHRSRFHTAGEIEGSASSGRIDTEITVSEGSSAPGRKFSKLNSNKEDTFGVPVQIFSPSHLSPSERKDLEQRLRWELEQVRNLQKRVDL QRTNGVTLSSSSDILSCSNGTNRPRIETFRKSSVMTSGPGKKVNLTGQSRVWNRGNSGRFKSAKQVSRQTTPITPNIILMKQCETLLKRLMSHQYGWVFN SPVDIVKLNIPDYYTVIKNPMDLGTIKSKISSGAYSSPLEFMADVRLTFKNAMVYNPQGSDAYIMADTLNKFFEMRWKAIEKKLPRAGGEVLQENSGPHE DFETAETSPAKKRKVTSFQHDIMPEPGKRGMTDEERLNLGRELESLLGEMPVNIIDFLREHCSSGRHGGEEEIEIDIDELSDDTLFTLRKLLDDYLQEKR KNQTRGEPCEIELLNESGPSNSSMQQKKGNDLGDEEIDIGGNGPPVSSYQPVEIEKEKDTGHKSSKISSDSSSDSDSGSSSQSESDNAKVSSPPNASRVS ETLVCGARLGNKTNAGAQLERNQSVSGLDQLEQTSQEKLSSVESDCQQDGESAPSDSQVSLEKRIRHALIKNRFADTILKAKEKSLSQGDKGDPQKLQRE REELELHKKKEKARLLAEAQAAEDAQRQAEAAAAAEARRKRELEREAARQALLKMEKTVEINENSQFLEDLEMLRVVPAEHVPISVDETSPDPSQDGLGG FKFGACNPLEQLGLFMKDDEEEEEGEPLNVLNPLNEVEEGEID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27260		GTE8	global transcription factor gr...		Potri.001G335000 [exp]	0	1	GTE903
AT3G08020			PHD finger family protein (.1)		Potri.001G264800 [exp]	1.00	0.8806
AT5G56250		HAP8	hapless 8 (.1.2)		Potri.001G472400 [exp]	3.00	0.8315
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	5.65	0.8249
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Potri.009G111200 [exp]	5.74	0.7843
AT1G35660			unknown protein		Potri.019G083100 [exp]	8.24	0.8564
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.006G034500 [exp]	8.36	0.8123
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242200 [exp]	9.79	0.8110
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.019G021200 [exp]	10.90	0.8094
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	12.72	0.8091
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	14.69	0.8182

Compare expression of checked genes

Potri.001G335000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.