Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01750 701 / 0 Ankyrin repeat family protein (.1) AT3G04140 472 / 2e-158 Ankyrin repeat family protein (.1) AT4G10720 80 / 1e-15 Ankyrin repeat family protein (.1.2) AT2G31820 80 / 2e-15 Ankyrin repeat family protein (.1) AT5G60070 75 / 6e-14 ankyrin repeat family protein (.1) AT1G07710 75 / 6e-14 Ankyrin repeat family protein (.1) AT5G51160 73 / 2e-13 Ankyrin repeat family protein (.1) AT5G02620 71 / 2e-12 ATANK1, ANK1 ankyrin-like1 (.1) AT2G01680 69 / 4e-12 Ankyrin repeat family protein (.1) AT1G05640 65 / 9e-11 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179100 [exp] 761 / 0 AT3G01750 579 / 0.0 Ankyrin repeat family protein (.1) Potri.010G055700 [exp] 726 / 0 AT3G01750 514 / 1e-175 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 96 / 2e-20 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.014G051100 [exp] 86 / 2e-17 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 86 / 5e-17 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 84 / 2e-16 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 78 / 5e-15 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 77 / 2e-14 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 77 / 2e-14 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022330 [exp] 860 / 0 AT3G01750 633 / 0.0 Ankyrin repeat family protein (.1) Lus10041582 [exp] 855 / 0 AT3G01750 635 / 0.0 Ankyrin repeat family protein (.1) Lus10036974 [exp] 395 / 1e-130 AT3G01750 308 / 2e-97 Ankyrin repeat family protein (.1) Lus10037894 [exp] 89 / 3e-18 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10025289 [exp] 87 / 1e-17 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10041537 [exp] 84 / 9e-17 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10038609 [exp] 81 / 2e-16 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10008329 [exp] 79 / 5e-15 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10026833 [exp] 74 / 2e-13 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10020209 [exp] 74 / 2e-13 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies) CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.001G335400.3 pacid=42789357 polypeptide=Potri.001G335400.3.p locus=Potri.001G335400 ID=Potri.001G335400.3.v4.1 annot-version=v4.1 ATGCCTCCTACATATTTTCCTCTTCGATGGGAGAGTACAGGAGACCAGTGGTGGTTTGCCTCTCCCATTGATTGGGCAGCTGCTAATGGTCACTATGACT TGGTAAGAGAGCTCCTTCGAATTGATAACAATCACCTCATCAACCTTACGTCTCTCAGGCGGATTCGCCGCCTTGAGTCTGTGTGGGATGATGAGGAACA GTTTGATGATGTTGCTAAATGTCGCTCTCAAGTTGCAAGAAAACTTTTCCACGAGTGTGAATCCAAGAAGGGGAAGAACTCTCTCATCCAAGCTGGCTAT GGTGGATGGCTTATGTACACAGCTGCCTCGGCTGGAGACTTAAGTTTTGTTCAAGAACTTCTTGAAAGGAACCCTTTACTTGTTTTTGGTGAGGGAGAGT ATGGAGTTACTGATACACTCTATGCTGCTGCCAGGAGTAAGAACTCTGAGGTTTTTAGGCTTATTTATGATTTTGCTATCTCTCCAAGGTTTTTGACAGC TAAAGGAGAATTTGAGGAGCACATAGGAGAAATTCCGTCTCTTTACAAGTGGGAGATGATGAACAGGGCTGTTCATGCCGCTGCTAGAGGAGGGAGTTTG ACCATTTTGAAGGAGCTCCTAAGTAATTGCACTGATGTTCTGGCCTACAGAGATAAGCAGGGCGCAACGATCTTACATGCTGCCGCCGCCAGAGGGCAGG TTGAGGTAGTTAAAGATCTTATAGCATCCTTTGAAATCATGAACTCCACAGACAATCTGGGGAACACAGCATTGCACATTGCTGCTTACAGGGGCCAATC ATCAGTTGTTGAAGCTTTGATTGTTGCATCCCCCTTATTGACCTCTTCAATAAACATTGCTGGAGAAACTTTTCTCCACATGGCAGTGTCTGGCTTCCAG AATCCTGCTTTTAGAAGATTGGATAGGCAGATTGAGCTGATGAAGCAGTTGATGAGTGGTAAAGTTTTCAAAATGGAAGATATCATAAATGCTAAAAACA ATGAGGGAAGGACTACTCTTCACATGGCCATTATTGGGAATGTTCACTCTGATCTAACAAAGCTCCTGATGTCTGCAAGATCTATAAATGTCAATGTTCG TGATGCAGATGGCATGACCCCACTTGATCTCCTTAGGCAACGGCCACATTCTGCATCATCAGATATACTAATGAGGCAACTCATTTCAGCAGGCGGAATA TTTGGTTGTCAGGATTATACTACAAGAAGAGCCATTGCTTCTCGCTTAAAGATGCAAGGCAATGGAGGCAGTCCAGGATCTTCATTTAGAATCTCTGACA ATGAAATATTTTTGTACACGGGCATTGAAATTGCCTCTGATGCCTACGCTGATCCAGCCACAGCAGGAGTGAGTCCATCCTCATCTGAGTTGAGTCACCC TGACCAAACCAATGACAACCAGGGCTCAGCACTTCATAAGAGAAGAGATTCTTTCAATTATGCAGCTCAGCAATTGAAAAGGGTTCTCCAATGGCCCCGG CTGAAGGATAAAAAGCCAGAAAAATTAAGGAAATCAATCGATCAGGGTTCGGTGGCTTCAGGCAAGAAATGCAGTGGTTCAGAGGAAACTCCAACCCCAC TTCGTCAGCGATTTTCAAATGCTTCATCCATTCCAAACAACAAGAGGACGCTTTCTGTCAGGAGTAATCAGTCTAGTCCAACAGCCAAGAAGAAGTTAGC CTCAGGGATGATGCATGGTGTTATGCAGGGCTTGCCACAAATAACTATCCCAGGTCGATCACGCTCAAGTTCATTTTCAAAATCATCCATTTCTTCTCCT AGTTCATTGGACAAACAGAAAGGTGTGTTTATTGAAAGTGATGTCGCTGGGCCATCTACTTCCAATAGATTATTCGATGATGGAACGCCAAATGTGAAAG AGAAAGAAGGCTCGACCAGTAAGAAGTTGAGGAGCCAGTATTTTTGTTTTGGTGCTGCAAGTCTGTCAGTGAAAACACCAGTGAGCAGGCACCGCAGCCA GGGTTCCAATCCTTCTGTTCTTTCAGTGGCTTGA
AA sequence Show only first row Show all	>Potri.001G335400.3 pacid=42789357 polypeptide=Potri.001G335400.3.p locus=Potri.001G335400 ID=Potri.001G335400.3.v4.1 annot-version=v4.1 MPPTYFPLRWESTGDQWWFASPIDWAAANGHYDLVRELLRIDNNHLINLTSLRRIRRLESVWDDEEQFDDVAKCRSQVARKLFHECESKKGKNSLIQAGY GGWLMYTAASAGDLSFVQELLERNPLLVFGEGEYGVTDTLYAAARSKNSEVFRLIYDFAISPRFLTAKGEFEEHIGEIPSLYKWEMMNRAVHAAARGGSL TILKELLSNCTDVLAYRDKQGATILHAAAARGQVEVVKDLIASFEIMNSTDNLGNTALHIAAYRGQSSVVEALIVASPLLTSSINIAGETFLHMAVSGFQ NPAFRRLDRQIELMKQLMSGKVFKMEDIINAKNNEGRTTLHMAIIGNVHSDLTKLLMSARSINVNVRDADGMTPLDLLRQRPHSASSDILMRQLISAGGI FGCQDYTTRRAIASRLKMQGNGGSPGSSFRISDNEIFLYTGIEIASDAYADPATAGVSPSSSELSHPDQTNDNQGSALHKRRDSFNYAAQQLKRVLQWPR LKDKKPEKLRKSIDQGSVASGKKCSGSEETPTPLRQRFSNASSIPNNKRTLSVRSNQSSPTAKKKLASGMMHGVMQGLPQITIPGRSRSSSFSKSSISSP SSLDKQKGVFIESDVAGPSTSNRLFDDGTPNVKEKEGSTSKKLRSQYFCFGAASLSVKTPVSRHRSQGSNPSVLSVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01750			Ankyrin repeat family protein ...		Potri.001G335400 [exp]	0	1
AT3G50780			unknown protein		Potri.005G129700 [exp]	7.48	0.8590
AT2G44930			Plant protein of unknown funct...		Potri.017G019300 [exp]	13.26	0.8608
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	17.97	0.8326
AT3G48550			unknown protein		Potri.015G096500 [exp]	19.39	0.8487
					Potri.010G001250 [exp]	30.70	0.8292
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	31.74	0.8268
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.001G161500 [exp]	33.64	0.7648
AT5G49800			Polyketide cyclase/dehydrase a...		Potri.004G231000 [exp]	33.74	0.8059
AT2G26975			Ctr copper transporter family ...		Potri.009G038700 [exp]	49.39	0.8073	Pt-COPT2.1
AT2G41550			Rho termination factor (.1)		Potri.016G043300 [exp]	50.19	0.8202

Compare expression of checked genes

Potri.001G335400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.