Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PHB3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40770 429 / 2e-153 ATPHB3 prohibitin 3 (.1) AT3G27280 422 / 1e-150 ATPHB4 prohibitin 4 (.1.2) AT5G14300 286 / 3e-97 ATPHB5 prohibitin 5 (.1) AT1G03860 250 / 1e-82 ATPHB2 prohibitin 2 (.1.2.3) AT4G28510 247 / 2e-81 ATPHB1 prohibitin 1 (.1) AT2G20530 237 / 1e-77 ATPHB6 prohibitin 6 (.1.2) AT5G44140 236 / 3e-77 ATPHB7 prohibitin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G065800 [exp] 470 / 1e-169 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.007G134700 [exp] 245 / 1e-80 AT4G28510 463 / 2e-166 prohibitin 1 (.1) Potri.017G017400 [exp] 241 / 5e-79 AT4G28510 457 / 5e-164 prohibitin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032072 [exp] 411 / 4e-146 AT5G40770 486 / 7e-176 prohibitin 3 (.1) Lus10014604 [exp] 409 / 3e-145 AT5G40770 482 / 2e-174 prohibitin 3 (.1) Lus10034395 [exp] 248 / 1e-81 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3) Lus10019161 [exp] 247 / 2e-81 AT4G28510 434 / 4e-155 prohibitin 1 (.1) Lus10042515 [exp] 247 / 3e-81 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3) Lus10021978 [exp] 246 / 3e-81 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3) Lus10035521 [exp] 206 / 2e-65 AT5G40770 221 / 1e-71 prohibitin 3 (.1) Lus10027776 [exp] 162 / 3e-49 AT5G40770 173 / 9e-54 prohibitin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [poplar] [flax] SPFH PF01145 [poplar] [flax] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Potri.001G335700.1 pacid=42789850 polypeptide=Potri.001G335700.1.p locus=Potri.001G335700 ID=Potri.001G335700.1.v4.1 annot-version=v4.1 ATGGGTAGCAGCCAAGCAGCAGTTTCCTTCCTTAACAACGTCGCTCGCGCAGCTTTTGGTCTTGGTGCCGCCGCTACCATTCTCAACTCCTCTCTTTACA CCGTCGATGGAGGCCAACGCGCTGTTCTCTTTGACAGATTCCGTGGAGTCATTGATACTAGCATTGGTGAAGGGACTCATTTCCTCATCCCTTGGCTTCA AAAGCCATTTATCTTTGACATCCGTACACGACCTCACACTTTCTCTTCTGTCTCTGGTACCAAGGATCTTCAGATGGTCAATCTTACCCTCCGTGTTCTC TCTCGTCCTGAGGTGTCACGTTTGCCTCATATCTTTCAACGCCTTGGGCTCGAGTATGATGAGAAGGTGCTCCCCTCGATTGGCAATGAGGTGTTGAAGG CTGTGGTTGCTCAGTTCAATGCTGATCAGCTCCTCACTGAGCGTCCCCAGGTGTCAGCTCTAGTCCGTGATGCACTCATCAAGCGTGCAAGGGACTTCGA CATAGTGATGGATGATGTGGCTATTACCCACTTGTCTTATGGAGTGGAGTTCTCAAGGGCTGTAGAGCAGAAACAGGTTGCGCAGCAAGAGGCAGAGAGG TCCAAGTTTGTTGTCATGAAGGCTGACCAGGAGAGAAGGGCTGCAATTATCAGGGCAGAAGGTGAGAGTGATGCCGCTAAGCTGATCTCTGAGGCAACAA CAAAAGCTGGTATGGGGCTGATTGAATTGAGAAGGATTGAAGCATCAAGGGAAATTGCTTCAACTCTGGCTAAGTCACCCAACGTGGCATACCTTCCTGG TGGTAACAACATGCTTCTGGCACTGAATGCAAACCGGTGA
AA sequence Show only first row Show all	>Potri.001G335700.1 pacid=42789850 polypeptide=Potri.001G335700.1.p locus=Potri.001G335700 ID=Potri.001G335700.1.v4.1 annot-version=v4.1 MGSSQAAVSFLNNVARAAFGLGAAATILNSSLYTVDGGQRAVLFDRFRGVIDTSIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVL SRPEVSRLPHIFQRLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPQVSALVRDALIKRARDFDIVMDDVAITHLSYGVEFSRAVEQKQVAQQEAER SKFVVMKADQERRAAIIRAEGESDAAKLISEATTKAGMGLIELRRIEASREIASTLAKSPNVAYLPGGNNMLLALNANR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.001G335700 [exp]	0	1	Pt-PHB3.2
AT1G30580			GTP binding (.1)		Potri.001G465900 [exp]	2.64	0.8348
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.016G002400 [exp]	2.82	0.8496
AT5G60390			GTP binding Elongation factor ...		Potri.010G218700 [exp]	6.70	0.8476
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.004G133800 [exp]	6.78	0.7896
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.007G134700 [exp]	6.92	0.8672	PHB1.1
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.011G089000 [exp]	8.36	0.8265
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.012G037500 [exp]	8.71	0.8706	Pt-RPL19.4
AT4G39880			Ribosomal protein L23/L15e fam...		Potri.005G075500 [exp]	8.94	0.8211
AT2G15000			unknown protein		Potri.009G093400 [exp]	12.00	0.8317
AT5G27430			Signal peptidase subunit (.1)		Potri.005G036200 [exp]	12.48	0.8287	Pt-SPP.1

Compare expression of checked genes

Potri.001G335700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.