Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 630 / 0 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 497 / 4e-173 Flavin-binding monooxygenase family protein (.1) AT1G12200 56 / 4e-08 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT2G33230 54 / 1e-07 YUC7 YUCCA 7 (.1) AT5G07800 54 / 1e-07 Flavin-binding monooxygenase family protein (.1) AT1G63340 54 / 2e-07 Flavin-containing monooxygenase family protein (.1) AT1G62580 53 / 3e-07 NOGC1 nitric oxide-dependent guanylate cyclase 1, Flavin-binding monooxygenase family protein (.1) AT1G65860 51 / 1e-06 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT5G61290 50 / 2e-06 Flavin-binding monooxygenase family protein (.1) AT4G13260 50 / 3e-06 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137600 [exp] 709 / 0 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 363 / 9e-120 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 349 / 2e-114 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 343 / 5e-112 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 292 / 2e-92 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 258 / 6e-81 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.001G121100 [exp] 56 / 3e-08 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.013G019900 [exp] 53 / 4e-07 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.002G254200 [exp] 51 / 1e-06 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005178 [exp] 675 / 0 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 667 / 0 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 651 / 0 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 353 / 5e-116 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10013230 [exp] 285 / 2e-89 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10023941 [exp] 228 / 4e-70 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10014439 [exp] 197 / 4e-57 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 188 / 1e-54 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10030750 [exp] 134 / 1e-35 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1) Lus10015529 [exp] 107 / 6e-25 AT4G30270 346 / 6e-119 SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13738 [poplar] [flax] Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.001G335900.1 pacid=42792932 polypeptide=Potri.001G335900.1.p locus=Potri.001G335900 ID=Potri.001G335900.1.v4.1 annot-version=v4.1 ATGCCAACACAAGCTATAAAACCTAGCTCTAGCTATATATCATCATACACCAAAATGGCTTGTGAGAAAAACCACATTCAGTGCTCCAGCAAAGTTGGGA TCATTGGAGCAGGTATTAGCGGCATTGCTGCCGCTAAACAGCTTCGACATTACAGTCCACTGGTCTTTGAGGCCTCTAATTCAATTGGGGGTGTCTGGAA ACATTGTTCTTTTAATTCTACTAAACTCCAAACACCTCGATGTGATTTCGAGTTTTCAGATTACCCTTGGCCCGAGAGGGATAATGCGAGTTTTCCTTCT CATGTCCAAGTTTTGGAATACTTGCACAACTATGCTACACATTTCGATGTGTTGAAATATGTCAAGTTCAACTCCAAGGTGGTGGAGATTCGGTACGTTG GTGACCGAACCAGCCAACTTGACATGAAACCAAAAGAGTATGGATCCTTGCTGAATGGCAATCCTGCTTGGGAGGTAGCTGTAGAGACTAACCAGTCCAC GAAGGTTCAGTGGTATGCTTTCGAGTTTCTCGTCGTATGCATTGGAAAGTATGGAGACTTGCCAAGAATGCCAGTATTTCCACCCCATCAAGGCGAAGAA GCATTTCTCGGCAAAGTCTTGCACGCTCTGGATTATGCTAAGCTCGACAAAGATGCTGCTCATAAGCTTCTCAAAGGAAAAAAGGTTGCCGTTGTTGGCT ACAAGAAATCAGCTCTTGATTTAGCTGTGGAGTGTGCAGCTGCAAACCAAGGGCCGGAAGGACAACCGTGCACAATGGTGATAAGGACTTTACATTGGAC TGTTCCTTCATACTGGATTTGGGGCTTGCCATTTTTCTTGTTCTTTTCAACAAGGTCCTCTCAATTCCTCCATGAAAGGCCATACCAAACCTTGTTCAAG ACCCTTCTGTGCCTTCTTCTATCTCCCATGAGAAGAGGAATTTCCAAGTTCATAGAGTCTTATTTGGCGTGGAAGCTTCCCCTTGCAAAGTATGGGTTGA AACCAGACCACCCATTTGTGGAGGGTTATGCATCTTGCCAAATGGCTATCTTGCCTGAAAATTTCTTTGAAGAGGCAGACAAGGGAAATATACTGTTCAA AAGAGCATCAAAGTGGTGGTTTTGGAGTCGAGGAATTGAATTTGAAGATAAAACCAGATTAGAGGCTGATGTTGTGCTTCTTGCCACTGGTTATGAAGGA AAAAAGAAGCTCCAAGATTTATTACCAGAACCCTTTTCCAGTCTTGTTGTAGACTCTTCTGGGATCATGCCCTTGTACAGGGGCACGATTCATCCATTGA TTCCTAACATGGCTTTCGTGGGATATATTGAAAGTGTATCGAACCTGCACACCGCAGAGCTGCGATGCATTTGGCTAGCTAGACTAGCAGATGAGAAATT CAAGCTTCCAGGCATTGAAAAGATGCTTGAACAAACAAATGAAGAGATACAAGTCATGAAGAGGACTACCAGATTTTACAAGAGGCATTGCATTTCCACT TTCAGTATCAACCACAGTGATGATATCTGTGAAGAGATGGGATGGAATTCTTGGAGGAAGAAGAATTGGTTCTCGGAAGCTTTCAGCCCTTATAACAGCC AAGACTACGACGAAAACAAAGAAAATTAG
AA sequence Show only first row Show all	>Potri.001G335900.1 pacid=42792932 polypeptide=Potri.001G335900.1.p locus=Potri.001G335900 ID=Potri.001G335900.1.v4.1 annot-version=v4.1 MPTQAIKPSSSYISSYTKMACEKNHIQCSSKVGIIGAGISGIAAAKQLRHYSPLVFEASNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDNASFPS HVQVLEYLHNYATHFDVLKYVKFNSKVVEIRYVGDRTSQLDMKPKEYGSLLNGNPAWEVAVETNQSTKVQWYAFEFLVVCIGKYGDLPRMPVFPPHQGEE AFLGKVLHALDYAKLDKDAAHKLLKGKKVAVVGYKKSALDLAVECAAANQGPEGQPCTMVIRTLHWTVPSYWIWGLPFFLFFSTRSSQFLHERPYQTLFK TLLCLLLSPMRRGISKFIESYLAWKLPLAKYGLKPDHPFVEGYASCQMAILPENFFEEADKGNILFKRASKWWFWSRGIEFEDKTRLEADVVLLATGYEG KKKLQDLLPEPFSSLVVDSSGIMPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRCIWLARLADEKFKLPGIEKMLEQTNEEIQVMKRTTRFYKRHCIST FSINHSDDICEEMGWNSWRKKNWFSEAFSPYNSQDYDENKEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.001G335900 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Potri.009G094500 [exp]	1.00	0.9998
AT1G30890			Integral membrane HRF1 family ...		Potri.001G327700 [exp]	4.89	0.9998
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195900 [exp]	6.24	0.9998	NQR.1
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G148900 [exp]	9.21	0.9996
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G148600 [exp]	10.24	0.9996
					Potri.006G260911 [exp]	10.81	0.9986
AT5G06740			Concanavalin A-like lectin pro...		Potri.016G045000 [exp]	10.95	0.9996
					Potri.001G439900 [exp]	11.22	0.9996
AT2G15220			Plant basic secretory protein ...		Potri.009G094600 [exp]	11.83	0.9988
					Potri.003G010499 [exp]	12.00	0.9998

Compare expression of checked genes

Potri.001G335900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.