Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01720 1214 / 0 unknown protein AT5G25265 71 / 1e-12 unknown protein AT2G25260 67 / 2e-11 unknown protein AT5G13500 65 / 9e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028100 [exp] 70 / 2e-12 AT5G13500 570 / 0.0 unknown protein Potri.003G195600 [exp] 67 / 1e-11 AT5G13500 532 / 0.0 unknown protein Potri.001G275600 [exp] 65 / 7e-11 AT5G13500 543 / 0.0 unknown protein Potri.018G023100 [exp] 65 / 1e-10 AT5G25265 583 / 0.0 unknown protein Potri.006G258800 [exp] 64 / 1e-10 AT5G25265 577 / 0.0 unknown protein Potri.009G070000 [exp] 62 / 4e-10 AT5G13500 515 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014878 [exp] 1290 / 0 AT3G01720 1197 / 0.0 unknown protein Lus10022320 [exp] 1288 / 0 AT3G01720 1181 / 0.0 unknown protein Lus10005347 [exp] 72 / 4e-13 AT5G25265 612 / 0.0 unknown protein Lus10041028 [exp] 70 / 3e-12 AT5G25265 618 / 0.0 unknown protein Lus10009691 [exp] 64 / 1e-10 AT5G13500 541 / 0.0 unknown protein Lus10036037 [exp] 61 / 2e-09 AT5G13500 542 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G336400.1 pacid=42789216 polypeptide=Potri.001G336400.1.p locus=Potri.001G336400 ID=Potri.001G336400.1.v4.1 annot-version=v4.1 ATGGCTACACTCACGGTATTGATGCTGGTGGGTTTTTTGTTTTGGATTGATGGCGGGTCGGGTTTGGAGCAAGAGGCTCCGTATAGGATCCATACTTTGT TCTCTGTGGAGTGCCAGAATTACTTTGATTGGCAAACTGTGGGGCTTATGCATAGTTTCAAGAAGGCCCAGCAACCGGGACCTATAACCAGATTATTGAG TTGTACGGATGAGGAGAAAAAGAATTATAGAGGGATGCATTTGGCACCAACTCTTGAAGTTCCTTCTATGAGTAGGCACCCCAAAACTGGTGATTGGTAC CCTGCAATAAACAAACCCGCTGGAATAGTCCACTGGCTTAAATATAGTAAAGATGCAGATGACGTTGATTGGGTTGTCATTCTAGATGCAGACATGATCA TTAGAGGTCCAATTATCCCTTGGGAACTTGGTGCAGAGAAAGGCAGGCCTGTTGCTGCATATTATGGATACTTGGTTGGATGTGACAATATTCTAGCTAA ATTGCACACAAAGCACCCTGAACTCTGTGACAAGGTTGGTGGGCTTTTAGCCATGCACATAGATGATCTTCGAGCATTAGCACCCTTGTGGCTTTCAAAG ACAGAAGAAGTACGGGAAGATAGAACTCACTGGGGAACCAATATTACTGGCGACATCTATGGGGCAGGATGGATAAGTGAGATGTATGGCTACTCATTTG GTGCAGCTGAAGCTGGACTTCGGCACAAGATCAGTGAGGACCTGATGATCTATCCAGGCTATATTCCACGAAAGGGCATTGAACCTATTCTTATACACTA TGGCTTGCCATTTAGTGTGGGGAATTGGTCTTTTTCTAAATTGGATCACCATGAAGATGATATTGTCTATGATTGTGGTCGGCTCTTTCCCGAGCCTCCT TATCCTAGAGAGGTGCGGTTGTTGGCATCTGATCTTAATAAAAAGCGAGCCCTGTTTTTAAATTTAGAGTGTATAAACACTTTGAATGAGGGACTTTTGT TACAGCATGCTGCAAATGGATGTCCTAAGCCTAAATGGTCAAGATACTTGAGTTTTTTGAAGAGCAAAACTTTTGCTGATCTAACTCGGCCAAAATTTCT TGCTCCTGGTAGTATAGAAACCAAGGAGGCTGCAAACCAGGGTGGAAACCAGGAGCAGGCCGTTGATGAACCTGAGAAACCACATCCAAAAATGCACACC ATATTTTCCACAGAATGCACTCGTTACTTTGATTGGCAGACTGTAGGCCTTGTCCACAGTTTCCACCTGAGTGGCCAGCCTGGAAATATAACACGGCTTC TCAGCTGCACGGATGAAGACTTAAAACAATATGCAGGCCATGATCTCGCTCCCACCCATTATGTTCCTTCCATGAGCCGGCATCCCCTAACAGGCGATTG GTATCCAGCAATTAATAAACCAGCTGCCGTCCTTCATTGGCTAAATCATGCAGATATTGATGCTGAGTTTATAGTTATTCTTGATGCTGACATGATTTTG AGAGGTCCAATTACACCATGGGAGTTCAAAGCTGCACGTGGCCGTCCGGTTTCAACTCCCTATGACTACCTAATTGGTTGTGACAATGAGCTTGCTAAAC TCCATACACGCCATCCAGATGCTTGTGACAAGGTTGGGGGTGTGATCATCATGCATATAGATGATCTCAGAAAATTTGCCATGCTATGGTTGCATAAATC CGAGGAGGTGCGGGCTGACAAAGCTCATTACGCTACAAATATCACTGGGGATATTTATGCATCGGGCTGGATTAGTGAGATGTATGGCTACTCATTTGGG GCAGCAGAGCTGAAACTGCGGCACCTCATAAACAGCGAGATTTTAATATATCCAGGTTATGTCCCTGAGCCTGGTGTTAAGTATAGAGTTTTCCACTATG GCTTAGATTTTAAAGTTGGGAATTGGAGTTTTGATAAGGCAAACTGGAGAGATACTGATGTGGTCAACAAATGCTGGGCTAAGTTTCCAGATCCACCTGA TCCTTTAACACTCGATCGGTCTAATGAGGACATCTTACAAAGAGACCTACTTAGCATAGAATGTGGAAAGACACTGAATGACGCTCTAGAACTGCATCAT AAGAAGAGAAATTGCCCTGATCCCCACTCTTTATCCACCTCAAAACGTGATACAGGAAAGGAAGATTCAAGTTCAAGGAAATTTGGCAGGTTTGATGGAA GTAATGCTGTAAGAAGCAACCCTGTGCCCACAAAAAACTCAGAGGAAACATCTCCGCCTGTTCCAAAAGACGGGCTATTTGGTTCTTTGAGGTTCTGGGT TGTTGCTCTGTGGATGATTTCAGGTTTGGGTTTCTTGGCTGTCATGTTCATGGTGTTTTCAGGCCGTAAAAGCAAGGGAAGTAAGAGTAAAACTTATAGA AGCAGAAGAAGATAA
AA sequence Show only first row Show all	>Potri.001G336400.1 pacid=42789216 polypeptide=Potri.001G336400.1.p locus=Potri.001G336400 ID=Potri.001G336400.1.v4.1 annot-version=v4.1 MATLTVLMLVGFLFWIDGGSGLEQEAPYRIHTLFSVECQNYFDWQTVGLMHSFKKAQQPGPITRLLSCTDEEKKNYRGMHLAPTLEVPSMSRHPKTGDWY PAINKPAGIVHWLKYSKDADDVDWVVILDADMIIRGPIIPWELGAEKGRPVAAYYGYLVGCDNILAKLHTKHPELCDKVGGLLAMHIDDLRALAPLWLSK TEEVREDRTHWGTNITGDIYGAGWISEMYGYSFGAAEAGLRHKISEDLMIYPGYIPRKGIEPILIHYGLPFSVGNWSFSKLDHHEDDIVYDCGRLFPEPP YPREVRLLASDLNKKRALFLNLECINTLNEGLLLQHAANGCPKPKWSRYLSFLKSKTFADLTRPKFLAPGSIETKEAANQGGNQEQAVDEPEKPHPKMHT IFSTECTRYFDWQTVGLVHSFHLSGQPGNITRLLSCTDEDLKQYAGHDLAPTHYVPSMSRHPLTGDWYPAINKPAAVLHWLNHADIDAEFIVILDADMIL RGPITPWEFKAARGRPVSTPYDYLIGCDNELAKLHTRHPDACDKVGGVIIMHIDDLRKFAMLWLHKSEEVRADKAHYATNITGDIYASGWISEMYGYSFG AAELKLRHLINSEILIYPGYVPEPGVKYRVFHYGLDFKVGNWSFDKANWRDTDVVNKCWAKFPDPPDPLTLDRSNEDILQRDLLSIECGKTLNDALELHH KKRNCPDPHSLSTSKRDTGKEDSSSRKFGRFDGSNAVRSNPVPTKNSEETSPPVPKDGLFGSLRFWVVALWMISGLGFLAVMFMVFSGRKSKGSKSKTYR SRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01720			unknown protein		Potri.001G336400 [exp]	0	1
AT3G24180			Beta-glucosidase, GBA2 type fa...		Potri.003G178000 [exp]	2.44	0.8436
AT4G39420			unknown protein		Potri.007G078650 [exp]	2.82	0.8717
AT3G15351			unknown protein		Potri.014G057550 [exp]	8.12	0.7739
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	8.94	0.8223
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.002G255800 [exp]	9.00	0.7884
AT4G04940			transducin family protein / WD...		Potri.018G148066 [exp]	10.95	0.7869
AT1G15780			unknown protein		Potri.003G028089 [exp]	11.83	0.8120
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.016G132000 [exp]	12.96	0.8066
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124000 [exp]	12.96	0.8310
AT3G24600			Late embryogenesis abundant pr...		Potri.006G160100 [exp]	16.06	0.7318

Compare expression of checked genes

Potri.001G336400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.