Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40710 343 / 9e-120 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G63280 308 / 7e-106 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090300 [exp] 342 / 2e-119 AT5G63280 320 / 2e-110 C2H2-like zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032116 [exp] 318 / 5e-110 AT5G40710 289 / 3e-98 zinc finger (C2H2 type) family protein (.1) Lus10014570 [exp] 298 / 6e-102 AT5G40710 254 / 5e-85 zinc finger (C2H2 type) family protein (.1) Lus10014794 [exp] 267 / 3e-90 AT5G63280 257 / 3e-86 C2H2-like zinc finger protein (.1) Lus10001106 [exp] 221 / 8e-73 AT5G63280 221 / 5e-73 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G336500.1 pacid=42793272 polypeptide=Potri.001G336500.1.p locus=Potri.001G336500 ID=Potri.001G336500.1.v4.1 annot-version=v4.1 ATGGGATTGACAAGAAAACAGCTTACTATTCTTTTTCTCTGTCTCTGCTTTACAGTTTTTCTGCAACTGACCTCTGTTTCTTCTTCTACTTCGCCTCAGG GTCAAAAGGAAACTGCATCTTCAAGAAGTTTTGAGCACGAGAAAGAAGTGCATTGTTCAAGAGAAAGGAGTAGGGCAGCATGGAAAATAATCGACGAGTA TTTGATGCCCTTTGTGGAGAAAGAACGATATAAGATCTCGAGTAGGTGCAGGCTTCATCCAGAGAATGACTTATACAGAGATCAAGAACAGCATAAGATG CATGTAGATATAAATGAATGGCGATGTGGATACTGTAAGAAGACCTTTTATGAAGAGAAGTACCTTGATAAGCATTTTGATAACAGACATTATGATCTGT TGAATGTGAGTCATAGCAAGTGCTTGGCAGATGTATGTGGTGTGTTGCATTGTGATCTTGTGCTGGATTCTGCGCCACACAAGACCAAGTGCAATCCTGC TGCCACAGGACGGAATAAACATCTGTGTGAGAGTCTCGCTGATAGCTGTTTCCCAGTCAATGAGGGTACTTCAGCTCTCCGTCTCAATGAGTTCTTCTTG CGCCAATTTTGTGATGCCCACACTTGCTCTGGAGGTCGGAAGCCATTTTCTAAAGGGGGGAAGAAGGAGACAAGCACACTGTATGTTATAATTTCTGTTC TGGTTTTGATGCTTCTGGCACTTTTCTACATCTTCATGTATTTGTACCTGAGGGGAATAAAAAGGGGCTCCCAAGGGCTGAAGCACATCTCAAAAAGTGG ACAGAAGAAAAGGTCTTGA
AA sequence Show only first row Show all	>Potri.001G336500.1 pacid=42793272 polypeptide=Potri.001G336500.1.p locus=Potri.001G336500 ID=Potri.001G336500.1.v4.1 annot-version=v4.1 MGLTRKQLTILFLCLCFTVFLQLTSVSSSTSPQGQKETASSRSFEHEKEVHCSRERSRAAWKIIDEYLMPFVEKERYKISSRCRLHPENDLYRDQEQHKM HVDINEWRCGYCKKTFYEEKYLDKHFDNRHYDLLNVSHSKCLADVCGVLHCDLVLDSAPHKTKCNPAATGRNKHLCESLADSCFPVNEGTSALRLNEFFL RQFCDAHTCSGGRKPFSKGGKKETSTLYVIISVLVLMLLALFYIFMYLYLRGIKRGSQGLKHISKSGQKKRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.001G336500 [exp]	0	1
AT3G03330			NAD(P)-binding Rossmann-fold s...		Potri.013G084100 [exp]	1.41	0.7277
AT1G61240			Protein of unknown function (D...		Potri.004G036800 [exp]	17.26	0.7274
AT4G16360			5'-AMP-activated protein kinas...		Potri.006G005800 [exp]	20.34	0.6844
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.009G018800 [exp]	41.41	0.6557
AT4G39690			unknown protein		Potri.007G087100 [exp]	49.07	0.6804
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.012G082700 [exp]	63.71	0.6639
AT4G32560			paramyosin-related (.1.2.3)		Potri.006G247900 [exp]	77.14	0.6094
AT4G30310			FGGY family of carbohydrate ki...		Potri.018G095700 [exp]	81.94	0.6234
AT2G04740			ankyrin repeat family protein ...		Potri.014G163200 [exp]	90.64	0.5736
AT2G36710			Pectin lyase-like superfamily ...		Potri.006G120100 [exp]	100.14	0.6571

Compare expression of checked genes

Potri.001G336500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.