Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27330 635 / 0 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G40720 631 / 0 Domain of unknown function (DUF23) (.1) AT1G27200 459 / 3e-156 Domain of unknown function (DUF23) (.1) AT4G37420 261 / 2e-79 Domain of unknown function (DUF23) (.1) AT2G33570 48 / 1e-05 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G039000 [exp] 423 / 4e-142 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.008G192000 [exp] 419 / 2e-140 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G252100 [exp] 284 / 5e-88 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014568 [exp] 673 / 0 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032118 [exp] 667 / 0 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10030815 [exp] 438 / 5e-148 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013291 [exp] 427 / 9e-144 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 422 / 4e-142 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 420 / 6e-141 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013221 [exp] 285 / 7e-89 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 266 / 5e-82 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 234 / 2e-69 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 206 / 1e-59 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13704 [poplar] [flax] Glyco_tranf_2_4 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Potri.001G336766.1 pacid=42792429 polypeptide=Potri.001G336766.1.p locus=Potri.001G336766 ID=Potri.001G336766.1.v4.1 annot-version=v4.1 ATGAAAGACCGTAGGAAACGAGATGTTGTTTCATGGAACAGGTTCTTTTGGTGCACTCTTTTTCTTGTCTTCTCTTGTGTTCTCTTCTCTGGCTTCACTT TCTCCACTTTTCGCTTCTTCTTCTTCTTTGGAGAAAAGTTTCACCCGGAAATTGTCTCAACATGGCGGACGCCGGCGATGGAGGCACTTTCCGGCGATTC TTCTGCGGTCCCGGCACCATCAATTCGTGAAACAGTTATACTTCCAGACCAGGTTCTAGTTTTCCTAAAATACCCTCCATCGTCTCGGTTATTTACAAAA GAGGACCTCCTATGCGTTTATCTCTCGGCTAATAAATCATCATCCCAGTCGCAGCGCAGGCTGCCCCCAAATCACATAGACGGTAAGGATGTCGATGACC AGATCGTACGGTGTCCACTCATTCCACGTGGCTACACTGTTTCGCTAGCTTTGAAATCTGGCGGCTATATCCATCCGGGACCCACTCACAAGTGGGACTC GCTTGTCTATGAAGCCTTGATAGACCGTGATAATACTACAGTTGTTTTTGTCAAGGGGCTTAATCTACGGCCGGAGAAACTTTCTAACGCTTCAAGGTTT GAGTGTGTGTACGGCTGGGATTTTAGGAGACCCAAGTTTTTGCTACGATCCCAAGTCATATCAATGGCTCAAGAGATCGTACGGTGCAAAACCCCTTTGA GTGTCTTGGGTGCCCCACAAATGGTCAACAGCTCCATCAAGGCATCCATTAGAGTGAAGGGTAGAGGAACATTACACTCCATAGCCCGCCCAGGGCTCCG GTCGAAGCCCCAACCTGGTCCACCGGAACGAAAACCACATGAAATGTGCATATGCACCATGCTACGCAATCAAGCTAGGTTCTTAAGAGAATGGGTCATG TACCATGCCCAAGTTGGAGTACAGAGTTGGTACATTTACGACAACAACAGTGATGATGACATTGAAGATGTTATGGAGTCACTAGTCCAGGCGGGTTTTA ACATTTCTAGGCATGTTTGGCCATGGATCAAGACCCAGGAAGCAGGGTTCGCACACTGCGCGCTAAGGGCACGAGAGTCGTGCGAGTGGGTTGGCTTCAT AGATGTAGATGAGTTTTTTTACTCTCCTCTGGGGTTAAGTTTGCATGATGTGATTAGCAATCAATCGGGGTCTGGAAATAACGTTGCTGAGATACGTACT TCGTGCTACAGTTTTGGGCCGTCGGGGCTCAAGCATCTTCCGCCACAAGGAGTGATGGTAGGGTATACGTGCCGACTCGGAGCACCGGAGAGACACAAGA GTATAGTGAAACCTGAAGCATTGAATTCCACACTGATCAACGTGGTGCACCATTTTCATTTAAGCGAGGGTTTTAGGTATGTAAATGCTGACAGGGGAGT TTTGGCTATTAACCACTACAAGTATCAAGTGTGGGAGGTGTTCAAGGAGAAGTTCTACAGGAGGGTAGCTACTTATGTGGCTGATTGGCAGAATGAGCAA AATGTTGGGTCCAAGGACCGAGCCCCGGGCTTGGGGACCAGAGCTGTTGAGCCACCAGATTGGTCAAGTAGGTTTTGTGAAGTGACAGACACTGGGCTCA GGAACCTGGTATTGCAGAAGTTTATGGACCCATTAACCAACCATTTGCCATGGGAGGAGCTAGGAAGAGGTTATGGAAATTAA
AA sequence Show only first row Show all	>Potri.001G336766.1 pacid=42792429 polypeptide=Potri.001G336766.1.p locus=Potri.001G336766 ID=Potri.001G336766.1.v4.1 annot-version=v4.1 MKDRRKRDVVSWNRFFWCTLFLVFSCVLFSGFTFSTFRFFFFFGEKFHPEIVSTWRTPAMEALSGDSSAVPAPSIRETVILPDQVLVFLKYPPSSRLFTK EDLLCVYLSANKSSSQSQRRLPPNHIDGKDVDDQIVRCPLIPRGYTVSLALKSGGYIHPGPTHKWDSLVYEALIDRDNTTVVFVKGLNLRPEKLSNASRF ECVYGWDFRRPKFLLRSQVISMAQEIVRCKTPLSVLGAPQMVNSSIKASIRVKGRGTLHSIARPGLRSKPQPGPPERKPHEMCICTMLRNQARFLREWVM YHAQVGVQSWYIYDNNSDDDIEDVMESLVQAGFNISRHVWPWIKTQEAGFAHCALRARESCEWVGFIDVDEFFYSPLGLSLHDVISNQSGSGNNVAEIRT SCYSFGPSGLKHLPPQGVMVGYTCRLGAPERHKSIVKPEALNSTLINVVHHFHLSEGFRYVNADRGVLAINHYKYQVWEVFKEKFYRRVATYVADWQNEQ NVGSKDRAPGLGTRAVEPPDWSSRFCEVTDTGLRNLVLQKFMDPLTNHLPWEELGRGYGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336766 [exp]	0	1
AT3G55060			unknown protein		Potri.008G047200 [exp]	1.73	0.9650
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	3.46	0.9615
AT4G26288			unknown protein		Potri.009G120300 [exp]	4.58	0.9383
AT3G11320			Nucleotide-sugar transporter f...		Potri.001G247600 [exp]	6.00	0.9434
AT4G02830			unknown protein		Potri.005G208800 [exp]	6.00	0.9341
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.017G101300 [exp]	6.32	0.9440
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G123200 [exp]	7.14	0.9492	FLA14.13
AT1G31940			unknown protein		Potri.001G135000 [exp]	7.28	0.8317
AT3G45400			exostosin family protein (.1)		Potri.013G067400 [exp]	8.83	0.9253
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.019G032500 [exp]	11.31	0.9157

Compare expression of checked genes

Potri.001G336766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.