Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27330 234 / 5e-69 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18660 76 / 8e-15 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT2G38920 48 / 5e-06 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT2G32950 46 / 4e-05 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G07200 44 / 4e-05 RING/U-box superfamily protein (.1.2) AT1G74990 43 / 5e-05 RING/U-box superfamily protein (.1) AT4G08590 45 / 6e-05 VIM6, ORTHL, ORL1 VARIANT IN METHYLATION 6, ORTHRUS-LIKE 1, ORTH-LIKE 1, ORTHRUS-like (.1.2) AT1G02860 44 / 0.0001 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT5G48655 43 / 0.0001 RING/U-box superfamily protein (.1.2.3) AT3G26730 44 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068100 [exp] 79 / 1e-15 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.016G064600 [exp] 51 / 5e-07 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.006G198600 [exp] 50 / 2e-06 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.001G067700 [exp] 49 / 5e-06 AT1G57820 811 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.003G162400 [exp] 49 / 5e-06 AT1G57820 813 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.014G130300 [exp] 47 / 1e-05 AT1G02860 448 / 3e-159 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G082200 [exp] 45 / 3e-05 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.002G205400 [exp] 45 / 4e-05 AT1G02860 437 / 5e-155 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G259000 [exp] 45 / 0.0001 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022324 [exp] 360 / 4e-122 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032119 [exp] 311 / 1e-103 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10014874 [exp] 91 / 3e-22 AT3G27330 86 / 3e-21 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10015722 [exp] 77 / 4e-15 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 77 / 5e-15 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10014873 [exp] 66 / 5e-12 ND 39 / 0.003 Lus10022569 [exp] 53 / 7e-08 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10015986 [exp] 49 / 4e-06 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10012290 [exp] 49 / 4e-06 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10039127 [exp] 46 / 5e-05 AT5G39550 776 / 0.0 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.001G336832.1 pacid=42791569 polypeptide=Potri.001G336832.1.p locus=Potri.001G336832 ID=Potri.001G336832.1.v4.1 annot-version=v4.1 ATGGTGAGTGAAGAACAAAAGGAGAGTCCTAGAGTCCGGATGCAATCAAACCCAGTTGACAATAGCCAAAATATGGAGAATCTTTTCAGTCCCAGATTCA AATCCGTGGCTGCCATGGCTGGTTGGGACGAAGAATCTATCCTTTTCGCAAGCCTTATTGTTGAAGACACGCCAGAAAGACAGTTCAAACATAAGAAACG CTCCGATTTGCACTTCAAGACTCCACCTTCAACCAATACAAGAAGGAAGCGGAGGGATCAGAAGAAGAGTCCGATTTCAATTCCTGTACCTATTCTAAAT CTTGACGAAGAGGAGGAACTTGTAATGAAAGAAAGTGAGAAAAAGAAGACGGAGCCGAGAATTGCTGTAGATGAAGAAAATAAATTAGGAGGAGACAAAT TAGCTAAAGACAACCCTGATGCTTCTTGCTCAAACTCAGCTCTTCCTTGCATGGATAAACTTAGAGAAGAGCTTTCTTGTGCTATTTGTTTGGAGATCTG CTTTGAACCGAGTACCACTTCTTGTGGACACAGTTTCTGTAAGAAATGTTTGCGATCTGCTGCTGATAAATGTGGGAAGAAATGCCCAAAGTGCAGGCAA CTGATAGGCAATAGCAGATCCTGTACGGTGAATACAGTTCTTTGGAACACAATACAGCTTCTGTTTCCTCAAGAAGTTGAAGCAAAGAAGGCATCGGGCA AGAAAAACCAGAAAGAGCATCAAAGCTCAGAAAGAAAAACCAATAATGATTTAATAAGCCGAAACGTTCGGCCTTCAAGAGTGTCATACAGAGACACAAG CGTTCAGCCTTCTAGGGTGCCAAACAGGGGAGCGATTACCAATAGAGGCATGTTGCGCCAAGATGACCCTTCTACTAGAGTGTCAAACAGAGATGCAAGT ACGAGTAGAGATATGTGGAACCAAGACGAGGAGGATACTCCATTGGTGCAAAGATTGCGAAGAAGAGAAGCTCTTGAGCGGCTAATATTAAGCAGAGAAG CAAGTGGGAGGAGAAGAAGAGGAATACCAAGCCAAGATGAGGATACTGCATTAGCTCTAAGGCTGCAGAGAGAAGAGTTTATGGAAGCTTTTGGGGGAAC TCAAGAGCAATCAGGAATCTCTCTTTCATCAGCTAGAGCAAACTTGAGAGTCATGGCATCTAGAGCCGCCATTAGCATTCATTCTAGAGGCCGGCCTATA TAG
AA sequence Show only first row Show all	>Potri.001G336832.1 pacid=42791569 polypeptide=Potri.001G336832.1.p locus=Potri.001G336832 ID=Potri.001G336832.1.v4.1 annot-version=v4.1 MVSEEQKESPRVRMQSNPVDNSQNMENLFSPRFKSVAAMAGWDEESILFASLIVEDTPERQFKHKKRSDLHFKTPPSTNTRRKRRDQKKSPISIPVPILN LDEEEELVMKESEKKKTEPRIAVDEENKLGGDKLAKDNPDASCSNSALPCMDKLREELSCAICLEICFEPSTTSCGHSFCKKCLRSAADKCGKKCPKCRQ LIGNSRSCTVNTVLWNTIQLLFPQEVEAKKASGKKNQKEHQSSERKTNNDLISRNVRPSRVSYRDTSVQPSRVPNRGAITNRGMLRQDDPSTRVSNRDAS TSRDMWNQDEEDTPLVQRLRRREALERLILSREASGRRRRGIPSQDEDTALALRLQREEFMEAFGGTQEQSGISLSSARANLRVMASRAAISIHSRGRPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336832 [exp]	0	1
AT5G66230			Chalcone-flavanone isomerase f...		Potri.005G114100 [exp]	1.41	0.9738
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	4.47	0.9662
					Potri.018G114600 [exp]	4.58	0.9628
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.011G072000 [exp]	5.29	0.9470
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	6.92	0.9621	Pt-ATK1.1
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.007G056500 [exp]	8.83	0.9515
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.001G272000 [exp]	10.72	0.9597
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	11.31	0.9076
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.015G070300 [exp]	11.48	0.9215
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.017G081000 [exp]	12.32	0.9545

Compare expression of checked genes

Potri.001G336832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.