Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50960 571 / 0 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT4G19540 120 / 4e-31 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 114 / 6e-28 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220500 [exp] 125 / 2e-33 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.002G042600 [exp] 120 / 3e-31 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 117 / 4e-29 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027463 [exp] 600 / 0 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1) Lus10039219 [exp] 590 / 0 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10024867 [exp] 123 / 2e-31 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10018779 [exp] 122 / 3e-31 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10036588 [exp] 112 / 8e-31 AT5G50960 99 / 3e-26 nucleotide binding protein 35 (.1) Lus10043252 [exp] 115 / 3e-28 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019395 [exp] 115 / 3e-28 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019468 [exp] 54 / 1e-08 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10011951 [exp] 52 / 9e-08 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 48 / 4e-06 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01656 [poplar] [flax] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G336900.1 pacid=42792013 polypeptide=Potri.001G336900.1.p locus=Potri.001G336900 ID=Potri.001G336900.1.v4.1 annot-version=v4.1 ATGGAGAACGGTGAAATCCCAGAAAACGCCAATGAACATTGCCCAGGTCCTCAATCTGATTCAGCTGGGAAATCCGATTCTTGTCAAGGATGTCCTAATC AACAAGATTGTGCTACTGCCCCTAAAGGCCCTGACCCTGACTTGGTTGCAATTGCTGAACGTATGGCTACTGTGAAGCACAAGATATTGGTTTTATCAGG CAAGGGTGGAGTCGGGAAGAGCACATTCTCTGCTCAACTGTCATACGCACTAGCAGCTATGGACTTCCAGGTTGGGCTCATGGACATTGACATCTGTGGC CCAAGTATCCCCAAGATGCTTGGCCTAGAAGGTCAAGAAATTCACCAAAGCAACCTTGGCTGGTCTCCCGTCTATGTTGAATCAAACCTTGGGGTCATGT CCATTGGATTCATGCTTCCGAACCCAGATGAAGCTGTCATATGGAGGGGCCCCCGCAAAAATGGGCTTATCAAGCAATTTCTGAAGGATGTTTATTGGGG GGAGCTTGATTTTCTTGTGGTTGATGCCCCACCTGGGACTTCTGATGAGCACATTTCAATTGTCCAATACCTTCAGGCTACCGGAATAGATGGTGCAATT ATTGTCACGACTCCACAACAAGTCTCTTTAATTGATGTGCGAAAAGAAGTGAGTTTCTGCAAGAAAGTTGGAGTTGAGGTTCTTGGGGTTGTTGAGAACA TGAGTGGCTTGTGCCAGCGATTGACAGATTTTAGGTTTGCAAAGTTGATGGAGAATGGTGAACAAAATGATATTACAGAAAGAGTTTTAGGGTACATGAG AGAGAAAGCTCCAGAAATGCTAGACTTGATTGCCTGCAGTGAAGTATTTGATAGCAGCGGTGGTGGTGCAACGCAAATGTGCCAGGAGATGGGAGTACCT TTTCTTGGGAAGGTACCATTGGATCCACAGCTTTGCAAGGCTGCTGAAGAGGGTAGATCCTGCTTTGCAGATCAGAAGTGTGGGGTAAGTGCGCCTGTAT TAAAGAGTATAATAGAGAAACTACTGGTGATGAATCAGTGGCGTGAAGAACTGCAGCAGATTGGAGAATAG
AA sequence Show only first row Show all	>Potri.001G336900.1 pacid=42792013 polypeptide=Potri.001G336900.1.p locus=Potri.001G336900 ID=Potri.001G336900.1.v4.1 annot-version=v4.1 MENGEIPENANEHCPGPQSDSAGKSDSCQGCPNQQDCATAPKGPDPDLVAIAERMATVKHKILVLSGKGGVGKSTFSAQLSYALAAMDFQVGLMDIDICG PSIPKMLGLEGQEIHQSNLGWSPVYVESNLGVMSIGFMLPNPDEAVIWRGPRKNGLIKQFLKDVYWGELDFLVVDAPPGTSDEHISIVQYLQATGIDGAI IVTTPQQVSLIDVRKEVSFCKKVGVEVLGVVENMSGLCQRLTDFRFAKLMENGEQNDITERVLGYMREKAPEMLDLIACSEVFDSSGGGATQMCQEMGVP FLGKVPLDPQLCKAAEEGRSCFADQKCGVSAPVLKSIIEKLLVMNQWREELQQIGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Potri.001G336900 [exp]	0	1
AT2G42520			P-loop containing nucleoside t...		Potri.001G007900 [exp]	5.19	0.6740
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.002G176000 [exp]	6.85	0.7423
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.006G124100 [exp]	7.34	0.7148
AT2G41460		ARP	apurinic endonuclease-redox pr...		Potri.016G042000 [exp]	15.87	0.6675
AT3G20240			Mitochondrial substrate carrie...		Potri.008G004100 [exp]	19.41	0.6689
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.001G072100 [exp]	21.63	0.7096
AT5G22790		RER1	reticulata-related 1 (.1)		Potri.009G150400 [exp]	25.69	0.7046
AT5G08320			unknown protein		Potri.005G090400 [exp]	31.46	0.6326
AT2G36300			Integral membrane Yip1 family ...		Potri.009G152600 [exp]	50.49	0.6294
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.015G106600 [exp]	52.76	0.6421

Compare expression of checked genes

Potri.001G336900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.