Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22660 86 / 8e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) AT1G16930 86 / 2e-18 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G60400 85 / 5e-18 F-box/RNI-like superfamily protein (.1) AT5G53840 82 / 4e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G58920 80 / 2e-16 F-box/RNI-like superfamily protein (.1) AT1G69630 77 / 3e-15 F-box/RNI-like superfamily protein (.1) AT3G58980 76 / 7e-15 F-box family protein (.1) AT5G44950 75 / 8e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G03220 70 / 4e-13 Protein with RNI-like/FBD-like domains (.1) AT3G58860 70 / 4e-13 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 190 / 2e-57 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 165 / 1e-47 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 126 / 7e-33 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 118 / 1e-30 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104300 [exp] 115 / 7e-29 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 110 / 4e-27 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 88 / 4e-19 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 71 / 2e-13 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 59 / 2e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029357 [exp] 141 / 2e-38 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10002239 [exp] 137 / 3e-37 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10024695 [exp] 136 / 9e-37 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 134 / 6e-36 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10029586 [exp] 134 / 8e-36 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10007058 [exp] 127 / 3e-33 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 127 / 3e-33 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 126 / 5e-33 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006318 [exp] 129 / 8e-33 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 123 / 1e-31 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G337200.1 pacid=42792471 polypeptide=Potri.001G337200.1.p locus=Potri.001G337200 ID=Potri.001G337200.1.v4.1 annot-version=v4.1 ATGAGGAAGAGAAGCCCGAAAGTTTGCAGTTCTCAACACGTAGATAGACTCAGTAATTTGCCGAACCATATTATCCACCACATCCTCTCCTTCCTCGATG CCAAGTATGCGGTCCAAACCTCTGTGCTTGCTAAGGGATGGAGAAATCTTTGGACTAGTGTTCATGTGCTTCACTTGAACAGCAATTCCTTCCGTAGATT GGGACGTTTTAAGAAATTTGTGGTTGCTGTTTTGAATAAACTCAATCATAACTCTACTGCTGGCACATTTCTCTTCACTTACCGAGGGAGAATAGATGAT TATCTCAAGAAAAGGGTTATCTATTTTGCCAGTTTCCATGGCGTTGGTCATCTTGTTCTTGATTTGGGCTGCAAACGACCTCCTGTCTCGCAAGCACTTC TCAATTGCCAAACCTTTAAAACCATAAAACTCAAGAATGCTACTTTCACTACATCATTTGGTTTCTCTAAACTCACCACTTTGCATCTTAAACATTGTTT GTTTTCTCTCGTTAGCAATTGCTTTGATTTTTCAGACTGTCTTCCCAATTTGAGCAGCTTATCCCTGCTTGGTTGTGATTTTACTAGATTCAAGGTTCTT AAAATATCAGGACCCCAATTGCTCAATGTAACAATAAGATCGATGTGGTACTCTTATGGTGGTCTCTCCAAGGGTTGTAAGGTGGAAATCTCTGCGCCAA AACTTACATTTTTTAGCTACAAAGAATCTCACGTGGTCGATTTCTCAGTAATTAACCTCCCTTCTCTACAACATGCCGATGTTGATGTTTTCCTTTCGTA TGAAGAGGAAAACAAGGACATTCAATGTTTGCTTAAATTCTTCCAAGGCCTCTATAATGTGCAATCTGCCACACTATCTTATTCTACTATTCAGGCCTTA AATGGAGTGCCTGGACTAGAGCATCAACAAAGTCCTTTCAGTACATTGTCTCTGAAACTAACACATCCCAGTGACTGCTCCTTTCCAATACCAGTAAAAG TGGCGAAGTACTTGTGTAATGGCTCCCCCACTCCAGATACTATTCTTGTCAAGTAG
AA sequence Show only first row Show all	>Potri.001G337200.1 pacid=42792471 polypeptide=Potri.001G337200.1.p locus=Potri.001G337200 ID=Potri.001G337200.1.v4.1 annot-version=v4.1 MRKRSPKVCSSQHVDRLSNLPNHIIHHILSFLDAKYAVQTSVLAKGWRNLWTSVHVLHLNSNSFRRLGRFKKFVVAVLNKLNHNSTAGTFLFTYRGRIDD YLKKRVIYFASFHGVGHLVLDLGCKRPPVSQALLNCQTFKTIKLKNATFTTSFGFSKLTTLHLKHCLFSLVSNCFDFSDCLPNLSSLSLLGCDFTRFKVL KISGPQLLNVTIRSMWYSYGGLSKGCKVEISAPKLTFFSYKESHVVDFSVINLPSLQHADVDVFLSYEEENKDIQCLLKFFQGLYNVQSATLSYSTIQAL NGVPGLEHQQSPFSTLSLKLTHPSDCSFPIPVKVAKYLCNGSPTPDTILVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	0	1
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Potri.004G000600 [exp]	1.00	0.9187
AT1G14990			unknown protein		Potri.008G129900 [exp]	3.74	0.8879
AT4G12710			ARM repeat superfamily protein...		Potri.014G170100 [exp]	5.47	0.8730
AT5G11580			Regulator of chromosome conden...		Potri.018G044400 [exp]	6.48	0.8690
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Potri.017G090500 [exp]	14.69	0.8718
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.004G002800 [exp]	19.59	0.8586
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	20.19	0.8609
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	21.02	0.8497
AT4G04955		ATALN	allantoinase (.1)		Potri.004G041800 [exp]	21.44	0.7924
AT3G26115			Pyridoxal-5'-phosphate-depende...		Potri.010G051200 [exp]	22.09	0.8679

Compare expression of checked genes

Potri.001G337200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.