Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ACG12.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40760 910 / 0 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1) AT3G27300 883 / 0 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G35790 484 / 4e-167 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT5G13110 482 / 1e-165 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 478 / 3e-164 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT1G09420 355 / 7e-116 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070200 [exp] 946 / 0 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.014G166800 [exp] 483 / 3e-166 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.001G059900 [exp] 467 / 7e-160 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 460 / 3e-157 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.013G005200 [exp] 361 / 2e-118 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.005G005866 [exp] 54 / 4e-08 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014615 [exp] 900 / 0 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10032079 [exp] 869 / 0 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 793 / 0 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10006386 [exp] 485 / 5e-167 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 462 / 4e-158 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 462 / 6e-158 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10012340 [exp] 403 / 2e-136 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10012339 [exp] 81 / 3e-18 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00479 [poplar] [flax] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02781 [poplar] [flax] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G337400.10 pacid=42789643 polypeptide=Potri.001G337400.10.p locus=Potri.001G337400 ID=Potri.001G337400.10.v4.1 annot-version=v4.1 ATGGGATCCGGTCAATGGATGGTAGAGAAGAGATCTGGTTTAGAAAATGATTCGTTTCTAAAGGAACATGAGACTCCGTCTGAAAGTGGGTGCCTTTCAA TTATTGTTCTTGGTGCTTCTGGTGATCTAGCCAAGAAGAAGACTTTCCCTGCTCTCTACCATCTTTATCGCCAGGGGTTTCTGCACCCAGATGAAGTCCA CATTTTCGGATATGCAAGGACTAGGATTTCAGATGATGAACTTAGAGATCGAATCCGTGGATATCTTGGCAAAGAAGCTGAAGTAGTATCAAAGTTCTTG CAACTGATCAAATATGTAAGTGGTTCTTATGATACTGAGGATGGCTTTCAGCTATTGGATAAGGAAATTTCACAGCATGAAGTATCAAAAAACAGTGCAG AAGGATCATCTCGAAGACTATTTTATCTTGCACTTCCCCCCTCAGTGTATCCAACTGTCTGCAGGATGATCAGAAAATGTTGCATGAATAAATCTGATAA TGGTGGATGGACTAGAATTGTCATTGAGAAACCTTTTGGCAAAGATTTGGAATCTGCAGAAAATCTCAGTGCCCATATTGGAGAGTTGTTTGAAGAAGCA CAACTTTTTCGTATCGATCACTACTTGGGAAAAGAATTAGTGCAGAACTTGCTAGTTCTCCGTTTTGCAAATCGCTTCTTTTTACCTCTTTGGAACCGCG ACAACATTTCCAATGTTCAGATTGTGTTTCGGGAAAATTTTGGAACTGAAGGTCGTGGTGGATATTTTGATGAATATGGGATTATTCGTGATATTATTCA AAATCACTTATTACAGATTCTTTGTCTGGTTGCCATGGAAAAGCCCGTTTCTCTCAAACCTGAATATATTCGGGATGAGAAAGTGAAGGTTCTTCAATCA GTACTTCCAATCAGAGATGAAGATGTTGTTCTTGGACAGTATGAAGGCTACAGGGATGACCCAACAGTTCCTGATCAATCAAATACCCCAACATTTGCTA CTGTTGTTCTGAGAATACATAATGAAAGATGGGAAGGGGTTCCTTTCATACTAAAGGCAGGAAAAGCATTACATTCAAGCAAGGCAGAGATACGTGTTCA ATTTAAGGACGTTCCTGGTGATATATTCAAATGTCAAAAGCAAGGAAGGAATGAGTTTGTAATACGCCTGCAACCCTCAGAAGCCATGTACATGAAACTT ACGGTCAAGCAGCCTGGACTCGAGATGTCTACTGTTCAAAGTGAACTGGACTTGTCATATATGCAACGTTATCAAGGGGTTCCCATCCCGGAGGCATATG AACGTCTGATTCTTGACACAATTAGGGGCGATCAGCAGCATTTTGTTCGCAGAGATGAATTGAAGGCAGCATGGGAGATCTTCACACCCCTTCTGCACAG GATTGACAATGGTGAAATGAAGCCAAAGGAATACCAACCAGGCAGCCGGGGTCCAGTCGAAGCAGATGAACTGCTGGCAAAAGCTGGTTATGTTCAAACA CATGGCTATATCTGGATTCCTCCTACATTGTAG
AA sequence Show only first row Show all	>Potri.001G337400.10 pacid=42789643 polypeptide=Potri.001G337400.10.p locus=Potri.001G337400 ID=Potri.001G337400.10.v4.1 annot-version=v4.1 MGSGQWMVEKRSGLENDSFLKEHETPSESGCLSIIVLGASGDLAKKKTFPALYHLYRQGFLHPDEVHIFGYARTRISDDELRDRIRGYLGKEAEVVSKFL QLIKYVSGSYDTEDGFQLLDKEISQHEVSKNSAEGSSRRLFYLALPPSVYPTVCRMIRKCCMNKSDNGGWTRIVIEKPFGKDLESAENLSAHIGELFEEA QLFRIDHYLGKELVQNLLVLRFANRFFLPLWNRDNISNVQIVFRENFGTEGRGGYFDEYGIIRDIIQNHLLQILCLVAMEKPVSLKPEYIRDEKVKVLQS VLPIRDEDVVLGQYEGYRDDPTVPDQSNTPTFATVVLRIHNERWEGVPFILKAGKALHSSKAEIRVQFKDVPGDIFKCQKQGRNEFVIRLQPSEAMYMKL TVKQPGLEMSTVQSELDLSYMQRYQGVPIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDNGEMKPKEYQPGSRGPVEADELLAKAGYVQT HGYIWIPPTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.001G337400 [exp]	0	1	ACG12.1
AT5G04550			Protein of unknown function (D...		Potri.010G233700 [exp]	5.56	0.7343
					Potri.010G198100 [exp]	6.00	0.6967
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	12.00	0.6802
					Potri.001G306932 [exp]	12.24	0.7218
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	13.78	0.6555
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	18.97	0.6699
AT5G45290			RING/U-box superfamily protein...		Potri.014G053500 [exp]	19.74	0.6760
AT5G25820			Exostosin family protein (.1)		Potri.006G239000 [exp]	19.74	0.6891
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Potri.014G016700 [exp]	22.04	0.6598
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	27.34	0.6613

Compare expression of checked genes

Potri.001G337400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.