Plant FIBer expression Database

Potri.001G337600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40740 949 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G337700
[exp]
1276 / 0 AT5G40740 954 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014617
[exp]
975 / 0 AT5G40740 988 / 0.0 unknown protein
Lus10032081
[exp]
716 / 0 AT5G40740 728 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14661 HAUS6_N HAUS augmin-like complex subunit 6 N-terminus
Representative CDS sequence
>Potri.001G337600.1 pacid=42793419 polypeptide=Potri.001G337600.1.p locus=Potri.001G337600 ID=Potri.001G337600.1.v4.1 annot-version=v4.1
ATGACGATGGACAGAGAGAAGGAGAGAGAGATAGAGTTAGAGAGTGCAATGTATACAAACTGTTTATTATTAGGTCTGGATTCGAGTATAATCGGACTCG
GACCTTCATCAAATGGCACTCCCCGGGTCGGACTTTTCCGTCACTCCAACCCTAAACTCGGTGAACAGCTTCTTTACTTCATCCTCTCCTCGCTTCGCGG
TCCTGCTCAATCCGCCAAAGATTTTGATAAGGTGTGGCCGATTTTTGATTCCGCTCAGTCACGTGATTTTCGTAAGGTTGTGCAAGGGATAATCAGTGAG
CTTGAATCGCAAGGGGCACTTCCAAGGAGCAATTCAAGGGTTTCTTCCCTTGCTACTTGTTGTGGACCGAGATTTGTTGAACTCTTGTGGCAACTTTCTT
TGCATGCTTTGAGAGAGGTTCACAGACGGACATTTGCTGCTGATGTTGCTTCAAACCCACTTCCTGCTTCATTAACAGACGTAGCCTTCCAACATGCAGC
TACATTGCTTCCTGTGACGAAGGCAAGAATAGCTCTCGAAAGAAGGAGGTTTCTTAAAAATGCAGAAACAGCAGTACAGAGACAGGCTATGTGGTCAAAT
TTGGCTCATGAGATGACTGCTGAGTTTCGTGGTCTTTGTGCAGAAGAGGCTTATTTGCAGCAAGAGTTAGAAAAGCTACATGACTTGCGGAACAAAGTGA
AGTTAGAAGGTGAACTGTGGGATGATCTAGTGTCAAGTTCTAGCCAGAATTCACATTTAGTTTTAAAGGCTACTCGCTTGTGGGATTCTATACTTGCTCG
AAAGGGTCAACATGAAGTTCTTGCTTCAGGGCCAATTGAGGACCTGATAGCTCATCGGGAGCATAGATACCGCATCTCTGGATCATCTTTGCTCTCTGCT
ATGGATCAGAGCTCTCAGGTTTCTTATTCAGATGAACATTCGGATGACAAAGAACATAGTGATGAATCTTATGTTAATGGAAATAGGGAAAAGTCGAAGA
ACAGTTTGGATTCATCCCATCTACAAGTAAATGATGAGATGCATTCTCGAGTGGATGATAGAGGTGGAAGAGTCCAGCCCACTGTTGATGTAGCAGAAAT
TATAAGGCGTTGGACACATGCATTGCAACGTATTCATAAACAGTCACTTCTTCTGGCAAAAGCTAATGATGGAGAAGGTCCAGATATATTAAGAAGTGCA
CTCGATGGTGGTACTAGTGGCCATGCTGAATCTTTAGCTGCAACTCTTGCAGAACATCAGCAACACCTGAGTAGTTTTCAGGGGCTTATTGACCAACTTA
ATGAAGTTGTTCCAACAATACAAAATTCAATATCAGCGTGTACAGAGAAAGTAAATAATATTTCTTCCAGCCAGCCACCAATGGCCAAGCATCGTGGAAC
CTCACCTATACAAGCTCAAAGCAGTGGAAGGACCTTGGAAACTAGCTCTGATAATGTTGCAGAGGTGACTTCAAAAATTTCCACAGTTCAGCTTGACAAG
GTATCTGCTAGCCCCCCTGCTTTGAAGCTACCACAGTTATTCAGTTTGACCCCAAATTCTTCTGGAAAAGGTACAAACTTGCAAAAGAGACAAATGTTAG
CTTCCCAAACCATCCAAATGGAAAATCTATCTGAAAGAAACTCTCTGGACCAGCCTTTATCAAATAATCGCTTAGATAATCCACCGCAAGATGGAGATAA
TTTTGTTCAAAACTTAAAGAGATCTGTAAGAGAAGCTGCTCTGTCAATGCAATCTTGCAACTCAGAATCATCTCATGACAGTCAGTCTGATGAAAGTTCT
GAGCACTTCTTTTTACCTCTTTCATCGCCTGGATTTTCTTTTGTCCCAGAAAAAAAAGCAGTCTCAACAAGAAGTAAAAGATTTTCAGTATCTCAAATGA
ACTCTGATTTGATTGAGAAACATGCTCGAGATGGCCATGCTGGAAGCAAGTACAAAGAATTACCGGAAATTTTAAATGATTTGGGTTCACTTACTGACTA
TGACCATGTAAATGGCTTCCTCACAGCTGCTGGATCAAATGGTGCGATATCTGATGGTCAGAGCTTGTTCAATGACATTGAGGAACCCCGTGATCAAGTA
TTCTCACCTCCTTTCCTGTTAGATACATCCCTTGTACCAGATTTGTACGAGGACTTACTTGCTCCACTTTCAGAAACTGAAACCGCCTTGATGGAGCTTT
GA
AA sequence
>Potri.001G337600.1 pacid=42793419 polypeptide=Potri.001G337600.1.p locus=Potri.001G337600 ID=Potri.001G337600.1.v4.1 annot-version=v4.1
MTMDREKEREIELESAMYTNCLLLGLDSSIIGLGPSSNGTPRVGLFRHSNPKLGEQLLYFILSSLRGPAQSAKDFDKVWPIFDSAQSRDFRKVVQGIISE
LESQGALPRSNSRVSSLATCCGPRFVELLWQLSLHALREVHRRTFAADVASNPLPASLTDVAFQHAATLLPVTKARIALERRRFLKNAETAVQRQAMWSN
LAHEMTAEFRGLCAEEAYLQQELEKLHDLRNKVKLEGELWDDLVSSSSQNSHLVLKATRLWDSILARKGQHEVLASGPIEDLIAHREHRYRISGSSLLSA
MDQSSQVSYSDEHSDDKEHSDESYVNGNREKSKNSLDSSHLQVNDEMHSRVDDRGGRVQPTVDVAEIIRRWTHALQRIHKQSLLLAKANDGEGPDILRSA
LDGGTSGHAESLAATLAEHQQHLSSFQGLIDQLNEVVPTIQNSISACTEKVNNISSSQPPMAKHRGTSPIQAQSSGRTLETSSDNVAEVTSKISTVQLDK
VSASPPALKLPQLFSLTPNSSGKGTNLQKRQMLASQTIQMENLSERNSLDQPLSNNRLDNPPQDGDNFVQNLKRSVREAALSMQSCNSESSHDSQSDESS
EHFFLPLSSPGFSFVPEKKAVSTRSKRFSVSQMNSDLIEKHARDGHAGSKYKELPEILNDLGSLTDYDHVNGFLTAAGSNGAISDGQSLFNDIEEPRDQV
FSPPFLLDTSLVPDLYEDLLAPLSETETALMEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G40740 unknown protein Potri.001G337600
[exp]
0 1
AT5G03330 Cysteine proteinases superfami... Potri.016G094700
[exp]
6.92 0.7957
AT5G15170 TDP1 tyrosyl-DNA phosphodiesterase ... Potri.004G022500
[exp]
10.24 0.7127
AT4G01960 unknown protein Potri.014G118000
[exp]
14.07 0.7673
AT3G54190 Transducin/WD40 repeat-like su... Potri.006G113000
[exp]
15.68 0.7759
AT1G61900 unknown protein Potri.004G016000
[exp]
16.24 0.7868
AT3G05480 ATRAD9 cell cycle checkpoint control ... Potri.013G017500
[exp]
16.24 0.7724
AT5G06610 Protein of unknown function (D... Potri.016G062400
[exp]
23.81 0.7232
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Potri.015G026100
[exp]
25.59 0.7683
AT1G01880 5'-3' exonuclease family prote... Potri.014G077300
[exp]
26.00 0.7233
AT3G22190 IQD5 IQ-domain 5 (.1.2) Potri.001G215200
[exp]
28.14 0.7123

Potri.001G337600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.