Plant FIBer expression Database

Potri.001G337700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40740 955 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G337600
[exp]
1278 / 0 AT5G40740 949 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014617
[exp]
991 / 0 AT5G40740 988 / 0.0 unknown protein
Lus10032081
[exp]
748 / 0 AT5G40740 728 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14661 HAUS6_N HAUS augmin-like complex subunit 6 N-terminus
Representative CDS sequence
>Potri.001G337700.4 pacid=42790112 polypeptide=Potri.001G337700.4.p locus=Potri.001G337700 ID=Potri.001G337700.4.v4.1 annot-version=v4.1
ATGACGATGGACAGAGAGAAGGAGAGAGAGATAGAGTTGGAGAGTGCAGTGTATACAAACTGTTTATTATTAGGTCTGGATCCGAGTATAATCGGACTCG
GACCTTCATCAAATGGCACTCCCCGGGTCGGACTTTTCCGTCACTCCAACCCTAAACTCGGTGAACAGCTTCTTTACTTCATCCTCTCCTCGCTTCGCGG
TCCTGCTCAATCCGCCAAAGATTTTGATAAGGTGTGGCCGATTTTTGATTCCGCTCAGTCACGTGATTTTCGTAAGGTTGTGCAAGGTATAATCAGTGAG
CTTGAATCGCAAGGGGCACTTCCAAGGAGCAATTCAAGGGTTTCTTCCCTTGCTACTTGTTGTGGACCGAGATTTGTTGAACTCTTGTGGCAACTTTCCT
TGCATGCTTTGAGAGAGGTTCACAGACGGACATTTGCAGCTGATGTTGCTTCAAACCCACTTCCTGCTTCATTAACTGATGTAGCCTTCCAACATGCAGC
TACATTGCTTCCTGTGACAAAGGCAAGAATAGCCCTCGAAAGAAGGAGGTTTCTTAAAAATGCTGAAACTGCGGTTCAGAGACAAGCTATGTGGTCAAAT
TTGGCTCATGAGATGACAGCTGAGTTCCGTGGTCTTTGTGCAGAAGAGGCTTATTTGCAGCAAGAGTTGGAAAAACTACATGACTTGCGGAACAAAGTGA
AGCTAGAAGGTGAACTGTGGGATGATCTTGTGTCGAGCTCTAGCCAGAATTCGCATTTAGTTTCGAAGGCAACTCGCTTGTGGGATTCTATACTTGCTCG
AAAAAGTCAACATGAAGTTCTTGCTTCAGGGCCAATTGAGGACCTGATAGCTCATCGGGAGCATAGATATCGCATCTCTGGATCATCTTTGCTCTCTGCT
ATGGATCAGAGCTACCAGGTTTCTTATTCAGATAAACATTCGGATGACAAGGAACATAGTGATGGATCTTATGCTAATGGAAATGGGGAAAAGTCAAAGA
GTAGTATGGATTCGTCTCATCTACAAGTAAATGATGAGATGCATTCTCGAGTGGATGATAGAGGTGGAAGAGTCCAGCCTACTGTTGATGTAGCAGAAAT
TATAAGGCGTTGGACACATGCATTGCAACGTATTCATAAACAGTCACTTCTTCTGGCAAAAGCTAATGATGGAGAAGGTCCAGATATATTAAGAAATGCA
CTCGATGGTGGTACTAGTGGCCATGGTGAATCTTTAGCTGCAACTCTTGCAGAACATCAGCAACACCTGAGTAGTTTTCAGGGACTTATTGACCAACTTA
ATGAAGTTGTTCCATCAATACAAAATTCAATATCAGAGTGTACAGATAAAGTAAATAATATTTCTTCCAGCCAGCCACCAATGGCCAAGCATCATGGTCG
AGCAACCTCACCTATACAAGCTCAAAGCAGTGGAAGGACCTTGGAAACTAGCTCTGATAATGTTGCGGAGGTGACTTCAAAACTTTCCACAGTTCAGCTT
GACAAGGTATCTGCTAGTCCCCCTGCTTTGAAGCTACCGCACTTATTCAGTTTGACCCCAAATTCTTCTGGAAAAGGTGCAAACTTGCAAAAGAGACAAA
TGTTAGCTCCCCAAACCATCCAAATGGAAAATCTTTCTGAAAGAAACTCTCTGGACCAGCCTTTATCAAATGATCGCTTAGATAATCCATTGCAAGATGG
AGAAAATTTTGTTCAAAACTTAAAGAGATCCGTAAGAGAAGCTGCACTGTCTATGCAATCTTGCAATTCAGAATCATCTCGTAACAGCCAGTCTGATGAA
AGTTCTGAACACTTCTTTTTACCTCTTTCATCGCCTGGATTTTCTATGGTCCCAGAAAACAAAGTAGTCTCAACAAGAAGTAAAAGATTTTCTGCATCTC
AAATGAACACTGCTTTGCTTGAGAAACATGCTCGAGATGGCCATGCTGGAAGCAAGTACAAAGAATTACCGGAAATTCTAAATGACTTGGGTCCACTTAC
TGACTATGATCACGTAAATGGCTTCCTCTCAGTTGCTGGTTCAAATGGTGCAATATCTGATGGTCAGAGGTCCTTCAATGATTTTGAGGAACCTTATGCT
CAAGTATTCTCCCCTCCTTTGCTGTTGGATACGTCCCTTTTACCAGATTCATACGAGGACTTACTTGCTCCACTTTCAGAAACTGAAACCGCCTTGATGG
AGCTTTGA
AA sequence
>Potri.001G337700.4 pacid=42790112 polypeptide=Potri.001G337700.4.p locus=Potri.001G337700 ID=Potri.001G337700.4.v4.1 annot-version=v4.1
MTMDREKEREIELESAVYTNCLLLGLDPSIIGLGPSSNGTPRVGLFRHSNPKLGEQLLYFILSSLRGPAQSAKDFDKVWPIFDSAQSRDFRKVVQGIISE
LESQGALPRSNSRVSSLATCCGPRFVELLWQLSLHALREVHRRTFAADVASNPLPASLTDVAFQHAATLLPVTKARIALERRRFLKNAETAVQRQAMWSN
LAHEMTAEFRGLCAEEAYLQQELEKLHDLRNKVKLEGELWDDLVSSSSQNSHLVSKATRLWDSILARKSQHEVLASGPIEDLIAHREHRYRISGSSLLSA
MDQSYQVSYSDKHSDDKEHSDGSYANGNGEKSKSSMDSSHLQVNDEMHSRVDDRGGRVQPTVDVAEIIRRWTHALQRIHKQSLLLAKANDGEGPDILRNA
LDGGTSGHGESLAATLAEHQQHLSSFQGLIDQLNEVVPSIQNSISECTDKVNNISSSQPPMAKHHGRATSPIQAQSSGRTLETSSDNVAEVTSKLSTVQL
DKVSASPPALKLPHLFSLTPNSSGKGANLQKRQMLAPQTIQMENLSERNSLDQPLSNDRLDNPLQDGENFVQNLKRSVREAALSMQSCNSESSRNSQSDE
SSEHFFLPLSSPGFSMVPENKVVSTRSKRFSASQMNTALLEKHARDGHAGSKYKELPEILNDLGPLTDYDHVNGFLSVAGSNGAISDGQRSFNDFEEPYA
QVFSPPLLLDTSLLPDSYEDLLAPLSETETALMEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G40740 unknown protein Potri.001G337700
[exp]
0 1
AT1G20760 Calcium-binding EF hand family... Potri.005G253000
[exp]
1.41 0.7566
AT2G17200 DSK2 ubiquitin family protein (.1) Potri.005G100200
[exp]
2.00 0.7050
AT5G03540 ATEXO70A1 exocyst subunit exo70 family p... Potri.010G241800
[exp]
11.13 0.6494
AT5G27970 ARM repeat superfamily protein... Potri.013G035100
[exp]
14.07 0.6599
AT3G07650 CO COL9 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500
[exp]
17.32 0.6425
AT1G69220 SIK1 Protein kinase superfamily pro... Potri.010G157400
[exp]
19.13 0.6400 SIK1.1
AT1G72160 Sec14p-like phosphatidylinosit... Potri.013G106000
[exp]
21.81 0.5528
AT2G43770 Transducin/WD40 repeat-like su... Potri.013G128001
[exp]
25.98 0.5907
AT4G15080 DHHC-type zinc finger family p... Potri.006G020800
[exp]
29.22 0.6116
AT1G08760 Plant protein of unknown funct... Potri.007G131600
[exp]
30.06 0.6329

Potri.001G337700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.