Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27325 1368 / 0 hydrolases, acting on ester bonds (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032122 [exp] 1495 / 0 AT3G27325 1289 / 0.0 hydrolases, acting on ester bonds (.1.2) Lus10014564 [exp] 1478 / 0 AT3G27325 1290 / 0.0 hydrolases, acting on ester bonds (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07819 [poplar] [flax] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.001G338000.4 pacid=42793287 polypeptide=Potri.001G338000.4.p locus=Potri.001G338000 ID=Potri.001G338000.4.v4.1 annot-version=v4.1 ATGATGGAAGGATTGAGATCCAAAATCAGAGTAGCAATTGTAGTTATAGTATCAGCATGGATCGGAATCCTTGCTTTGTACGGTTTATTAAAGCCGATCT CCAATGGCTGCATAATGACTTACATGTATCCTACTTACGTTCCTATTTCTACAAATGGCGGCGTGTCGTCTGCTAAGTATGGATTGTATTTATACCATGA AGGTTGGAAGAAGATTGATTTTAATCAGCATCTTAAGCAGCTTAGTGGAATTCCTCTTCTTTTTATTCCTGGAAATGGTGGCAGTTACAAACAGGTTAGA TCCCTGGCTGCAGAATGTGATAGGGCGTATCAGGGAGGTCCACTTGAACAGGCATTTTATCAAGAGGCTTCCCTGACTCCCGAGGAGGGAGGGGAAGATA TGGATATAGCTGGCTTCCAGTTACCTAATCAATATAGTAGAAGGCTGGATTGGTTTGCTGTAGACCTTGAAGGTGAACATTCTGCAATGGATGGTCGGAT ACTGGAAGAGCACACAGAATATGTTGTTTATGCCATCCACAGGATTCTGGATCAATATGAAGAATCTCGTGCTGCCCGAGAAAAAGAAGGTGCTGCTGCC TATGGTAGTTTGCCAAAAAGTGTCATATTAGTTGGACATTCAATGGGTGGTTTTGTTGCTAGAGCTGCACTCATCCACCCTCGTTTAAGGAAGGCAGCTG TCGAGACTGTTCTTACTCTTTCAACACCACACCAATCACCTCCTGTGGCATTGCAGCCATCATTGGGTCACTATTTTTCCCAGGTAAATGAGGAATGGAG AAAGGGATATGAGGTCCAAACCACTCAGACAGGACATTATGTGTCTGATCCATTACTCTCTCGTGTAGTTGTTGTCTCCATCTCTGGTGGCTATAACGAT TATCAGGTTAGAACGAAGTTAGAGTCCCTCGATGGTATTGTGCCACCCACCAATGGTTTTTTGATAAGTAGTACAGGAATGAAAAATGTTTGGTTGTCAA TGGAACATCAGGCTATTTTGTGGTGCAACCAGTTAGTTGTGCAAGTGTCACATACTCTCCTTAGTCTGATAGACTCCAAAACAGGCCAGCCATTTCCTGA AGCTAATAAGAGACTTTCAGTATTTGCAAGGATGCTTCGTAGTGGGATACCACAGAGTTTCAACTGGATGTCATCTCATAGATCAACATATGTTCCCTTA AAGGACTTGAAAAATGCAACTGGTTCTCAAGTGCATACTTTTTCCAGTTGCCCCAACAATGTTCACTGGAATGATGATGGCCTTGATAGGGATTTATATA TCCAGACAACTACCATGACTGTTTTGGCAATGGATGGGAGGAGACGATGGTTGGATATACATAAATTGGGGTCAGATGGAAAAGGACACTTCATGTTTGT AACAAATCTCGCTCCATGTTTTGGGATTAGACTTCATTTATGGCCTGATAAGGGGAAATCTGCTTCAGAAATGGCTGCAAGTAAAAGGGTTCTAGAGGTT ACAGCAAAATTGGTGCAGATTCCATCAGGACCAGCACCAAGACAGATTGAACCTGGAAGTCAGACCGAGCAAGCACCTCCATCTGCTGTACTCTGGTTGA GTCCTGAAGATATGCATGGTTTCAGATTCTTGACTGTCTCAGTTGCTCCTCGTCCGACAATTTCAGGCAGGCCTCCACCAGCAGCTTCCATGGCAGTTGG TCAGTTCTTTAACCCAGATGACGGAAAGAGAGATTTATCTGCTCAGTTTATGCTTCTATCTAGCCATTCTCAGAAGGAATTACTTTTGAAGGAGGATCAT CCCCTAGCTCTCAATTTATCATTCACTGTTAGCTTAGGCCTTCTGCCCATTTCTTTATCTTTGACGACCACAGGGTGTGGAATACAAAGGTCTGGCCTTC TGGCAGAAGAGGTTGGAGACATGGAAAACAGTAGGCTTTGTAAACTGCGGTGTTTCCCACCAGTAGCGCTTGCCTGGGATCATACATCAGGTCTTCACAT CCTTCCAAATTTGTTCAGTGAAACTATTATGGTTGATTCCTCACCTGCCCTATGGAGTTCTACCCAGGGGTCGGAAAAAACCACCATTATGTTACTGGTT GATCCTCATTGTTCATATAAAGCAAGAATTGCTGTTTCAGAAACTGCAGCTGCTAGCAGATTTTTGCTTTTGTATAGCTCACAGATAGTTGGCTTCTCCA TTGCGGTTATCTTTTTTGCTCTGATGCGACAAGCACATGCATGGGATCTTGATCTGCCCATGCCTTCAATGCTGGTGGCTGTTGAGTCCAATTTGAGAAT TCCATGGCCATTTTTGCTTCTAGGCTTTGTACCCATTTTGTTTTCCTTGTTCATTTCCTTGCTAAAGTCTCAACCACTTCCACCATTGGCAAGCTTCGTC TTTGTATCAACGATTTGCTATGTTTTTGCAAATGGATCTGTGATTCTTCTGGTATTGGTTTCACAATTGGTGTTCTATGGGGTTGCAATCATACATGTTT TCATCAAGTCAAGGTGGCAAGAATGTGAAGGAAATATTTGCTTGGCATTTCTTCATTGGTTTATTAATTTATCCTCTGGTTTCTTTTCATTAAAGCAGGT TGTGAGGGTTCTTAGAGTCAATCCGTTACTTGTTACTGCACTGACTGCTATTACCTTGGGGTGCTTTGTCCAACCAGCACTGGGTTTATTCATATTGATC TTGTCTCATGCTTTGTGCTGTCATAATGCGTTGTGCAGTTTTTTTACGGCTTCCTTTCGCAGCCATGCACGAATGAAAGAGTTGCTTGATTTTAAAGATG TTGGGAATGAAAGATCTCAGCAATTTGCATCTAAACATGATGCTGGACTCGACCAGAATTTCCAGCTGGAAGAGAACAGCTCCAGTAGTCCTGACTCTTC AAGAAGTTTTGGGGACACCCAATTAGAGATATTCCATCACCGGCATGGTTTATTGATTCTGCATCTTCTTGCAGCGCTAATGTTTGTCCCCTCTTTTGTG GCTTGGTTGCAGAGAATAGGCATGGGACATAGCTTTCCATGGTTCCTTGATTCAGCTCTTTGCATTGGTGTCATTCTTCATGGTATCCTCAACTCAAAGC CTGAGTTCAACTCCATGTTTTCCTTCCCAGAAATATTTGGGAAGGAAGTGAGATTGGACTTCATCTACTTGCTCGCCGGCTACTATTCCTATGTTGCTGG TTTGGGCTTGGTGCCATACAGAGTATTTTATGCCATGGCTGCTATAGGTTTCATATCTTGTGTCATGAGGATCTTATATAGGAGGAGCAGGGAGAAGGGA GAGCCACGTTTTGGCAGAAAAAAGCGTTCTCATAGACATTGA
AA sequence Show only first row Show all	>Potri.001G338000.4 pacid=42793287 polypeptide=Potri.001G338000.4.p locus=Potri.001G338000 ID=Potri.001G338000.4.v4.1 annot-version=v4.1 MMEGLRSKIRVAIVVIVSAWIGILALYGLLKPISNGCIMTYMYPTYVPISTNGGVSSAKYGLYLYHEGWKKIDFNQHLKQLSGIPLLFIPGNGGSYKQVR SLAAECDRAYQGGPLEQAFYQEASLTPEEGGEDMDIAGFQLPNQYSRRLDWFAVDLEGEHSAMDGRILEEHTEYVVYAIHRILDQYEESRAAREKEGAAA YGSLPKSVILVGHSMGGFVARAALIHPRLRKAAVETVLTLSTPHQSPPVALQPSLGHYFSQVNEEWRKGYEVQTTQTGHYVSDPLLSRVVVVSISGGYND YQVRTKLESLDGIVPPTNGFLISSTGMKNVWLSMEHQAILWCNQLVVQVSHTLLSLIDSKTGQPFPEANKRLSVFARMLRSGIPQSFNWMSSHRSTYVPL KDLKNATGSQVHTFSSCPNNVHWNDDGLDRDLYIQTTTMTVLAMDGRRRWLDIHKLGSDGKGHFMFVTNLAPCFGIRLHLWPDKGKSASEMAASKRVLEV TAKLVQIPSGPAPRQIEPGSQTEQAPPSAVLWLSPEDMHGFRFLTVSVAPRPTISGRPPPAASMAVGQFFNPDDGKRDLSAQFMLLSSHSQKELLLKEDH PLALNLSFTVSLGLLPISLSLTTTGCGIQRSGLLAEEVGDMENSRLCKLRCFPPVALAWDHTSGLHILPNLFSETIMVDSSPALWSSTQGSEKTTIMLLV DPHCSYKARIAVSETAAASRFLLLYSSQIVGFSIAVIFFALMRQAHAWDLDLPMPSMLVAVESNLRIPWPFLLLGFVPILFSLFISLLKSQPLPPLASFV FVSTICYVFANGSVILLVLVSQLVFYGVAIIHVFIKSRWQECEGNICLAFLHWFINLSSGFFSLKQVVRVLRVNPLLVTALTAITLGCFVQPALGLFILI LSHALCCHNALCSFFTASFRSHARMKELLDFKDVGNERSQQFASKHDAGLDQNFQLEENSSSSPDSSRSFGDTQLEIFHHRHGLLILHLLAALMFVPSFV AWLQRIGMGHSFPWFLDSALCIGVILHGILNSKPEFNSMFSFPEIFGKEVRLDFIYLLAGYYSYVAGLGLVPYRVFYAMAAIGFISCVMRILYRRSREKG EPRFGRKKRSHRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27325			hydrolases, acting on ester bo...		Potri.001G338000 [exp]	0	1
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	2.82	0.9344
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	3.00	0.9291
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Potri.006G027100 [exp]	3.31	0.9428	Pt-POK.1
AT3G24530			AAA-type ATPase family protein...		Potri.018G081000 [exp]	3.74	0.9301
AT1G60070			Adaptor protein complex AP-1, ...		Potri.016G104700 [exp]	6.48	0.9356
AT4G24840			unknown protein		Potri.015G094000 [exp]	7.07	0.9379
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	8.94	0.9298
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	9.48	0.9320	Pt-VLN4.2
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	11.35	0.9036
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	13.19	0.9303

Compare expression of checked genes

Potri.001G338000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.