Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDH2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40650 444 / 3e-159 SDH2-2 succinate dehydrogenase 2-2 (.1) AT3G27380 441 / 8e-158 SDH2-1 succinate dehydrogenase 2-1 (.1.2) AT5G65165 312 / 1e-106 SDH2-3 succinate dehydrogenase 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022319 [exp] 458 / 1e-164 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10014573 [exp] 456 / 6e-164 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10014879 [exp] 452 / 2e-162 AT5G40650 467 / 2e-168 succinate dehydrogenase 2-2 (.1) Lus10032113 [exp] 450 / 2e-161 AT5G40650 467 / 3e-168 succinate dehydrogenase 2-2 (.1) Lus10028289 [exp] 318 / 7e-109 AT5G65165 435 / 1e-154 succinate dehydrogenase 2-3 (.1) Lus10040198 [exp] 295 / 3e-100 AT5G65165 391 / 1e-137 succinate dehydrogenase 2-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [poplar] [flax] Fer2 PF13085 [poplar] [flax] Fer2_3 2Fe-2S iron-sulfur cluster binding domain CL0344 [poplar] [flax] 4Fe-4S PF13534 [poplar] [flax] Fer4_17 4Fe-4S dicluster domain
Representative CDS sequence Show only first row Show all	>Potri.001G338400.2 pacid=42791325 polypeptide=Potri.001G338400.2.p locus=Potri.001G338400 ID=Potri.001G338400.2.v4.1 annot-version=v4.1 ATGGCAACTGGGTTGCTCAAGAGAGGAGCCATTTCAACGGCTAAGATCTCATCATTAACCTCAAGATTTATACCATCTCGCCTCCAAGCCACGGCGGCGG CGGCGGTGGCAGAAGCCAAACCAGTTGAGCAGCCAACAAACCCTACTCAACCACAACATCTGAAAACATTCCAAATCTACCGATGGAACCCAGACAACCC AACCAAACCAGAGCTCCAAAACTACGAAGTAGACCTGAACAAGTGCGGTCCGATGGTGCTAGATGCTTTGATCAAGATAAAAAACGAGATCGACCCAACG CTGACATTTCGTCGATCATGTCGTGAAGGAATTTGTGGGTCCTGTGCAATGAATATGGATGGGTGTAATGGGCTTGCTTGCTTGACAAAGATTGATAAGT CTGGACCGCCTAGTATGATCAATCCGTTGCCACACATGTTTGTGATCAAAGATCTGGTTGTGGATATGACTAATTTTTATAATCAGTATAAGAGTATTGA GCCTTGGTTGAAGAGGAAGAATCCACCACCTGTTAAAGGGAAGGAGATTCTGCAGACTAAGAAAGATAGGGCTAAGCTTGATGGGATGTACGAGTGTATT TTGTGTGCTTGTTGTAGTACTTCTTGCCCTAGCTATTGGTGGAATCCTGAGTCTTATTTGGGCCCTGCTGCTTTGCTTCATGCTAATAGGTGGATCATGG ATAGCCGTGATGAATATACCAAGGAGCGCCTGGACGCAGTCAATGATGAGTTTAAGCTCTATCGTTGCCATACCATATTGAATTGTGCCCGTGCCTGCCC CAAGGGATTGAACCCTGGGAAGCAGATTCAAAATATCAAGAAGCTTGAGCGGAGCTAG
AA sequence Show only first row Show all	>Potri.001G338400.2 pacid=42791325 polypeptide=Potri.001G338400.2.p locus=Potri.001G338400 ID=Potri.001G338400.2.v4.1 annot-version=v4.1 MATGLLKRGAISTAKISSLTSRFIPSRLQATAAAAVAEAKPVEQPTNPTQPQHLKTFQIYRWNPDNPTKPELQNYEVDLNKCGPMVLDALIKIKNEIDPT LTFRRSCREGICGSCAMNMDGCNGLACLTKIDKSGPPSMINPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPVKGKEILQTKKDRAKLDGMYECI LCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERLDAVNDEFKLYRCHTILNCARACPKGLNPGKQIQNIKKLERS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	0	1	SDH2.1
AT2G16460			Protein of unknown function (D...		Potri.009G123700 [exp]	1.00	0.8445
AT5G46020			unknown protein		Potri.011G060800 [exp]	3.87	0.7906
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.004G153400 [exp]	4.89	0.7600	Pt-ACT2.2
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.001G067900 [exp]	5.47	0.7960
AT4G26060			Ribosomal protein L18ae family...		Potri.006G146300 [exp]	6.92	0.7524
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	8.77	0.7574	RAB11.4
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.004G101700 [exp]	10.95	0.7167
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.017G110700 [exp]	15.19	0.7443
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.005G099600 [exp]	18.11	0.7804
AT2G38710			AMMECR1 family (.1.2)		Potri.010G240000 [exp]	19.74	0.6881

Compare expression of checked genes

Potri.001G338400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.