Plant FIBer expression Database

Potri.001G338700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57280 370 / 8e-130 RID2 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G049800
[exp]
452 / 2e-162 AT5G57280 355 / 5e-124 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028960
[exp]
385 / 1e-135 AT5G57280 444 / 4e-159 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10007484
[exp]
384 / 3e-135 AT5G57280 436 / 9e-156 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10020005
[exp]
275 / 1e-92 AT5G57280 327 / 2e-113 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10015533
[exp]
43 / 3e-05 AT5G57280 46 / 1e-06 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
CL0063 PF12589 WBS_methylT Methyltransferase involved in Williams-Beuren syndrome
Representative CDS sequence
>Potri.001G338700.1 pacid=42789437 polypeptide=Potri.001G338700.1.p locus=Potri.001G338700 ID=Potri.001G338700.1.v4.1 annot-version=v4.1
ATGTCGAATCGGCCAGAGCTACTAGCTCCACCTGAGATTTTTTATGATGATTCAGAGGCTCGTAAATACACTTCTTCTTCTCGTATTATCGATATTCAGG
CTAGGCTATCAGAAAGAGCATTGGAGCTTCTTGCTTTGCCTGTTGATGGAATCCCTAGATTACTCCTCGATATCGGCTGTGGATCTGGACTTAGTGGGGA
GACATTAACTGAAAATGGTCACCAATGGATCGGCTTAGATGTTTCGCAATCAATGCTTAATATTGCTTTGGAGCGGGAGGTTGAGGGTGATCTTTTACTT
GGTGATATGGGTCAGGGCCTAGCACTTCGACCTGGAATTATTGATGGTGCCATCAGTATTTCAGCTGTTCAGTGGCTATGCAATGCAGACAAGTCCTCCC
ATGAACCAAGACTAAGATTGAAGGCTTTCTTTGGATCATTATATAGATGCTTGGCAAGAGGAGCAAGAGCAGTGTTTCAGATGTATCCTGAAAACATAGC
CCAGCGTGAATTAATTTTGAGATCTGCAATGCATGCTGGATTTGCTGGTGGTGTTGTTATTGATTACCCACACAGTGCCAAGAGTAGAAAAGAATACCTC
GTGCTTACTTGTGGACCACCATCTTTAAGCACTGCTGTTCCCAGGGGGAAAGGCGAAGATGGAGAAAGCTGCTCTGAAGATGAAAATAGTGAAGAAAATC
AGATGGTTTGCATTTCAGACAGGAACAGACCTAAGAAAAAACAGAAAATAACTAGGAAAGGGAAGGGCAGAGATTGGATATTTAAAAAGAAAGAGCAACT
GAGACGAAAAGGAAACGCAGTGCCTCCTGACACAAGATACACTGGTCGAAAACGGAAGGCTCGATTTTGA
AA sequence
>Potri.001G338700.1 pacid=42789437 polypeptide=Potri.001G338700.1.p locus=Potri.001G338700 ID=Potri.001G338700.1.v4.1 annot-version=v4.1
MSNRPELLAPPEIFYDDSEARKYTSSSRIIDIQARLSERALELLALPVDGIPRLLLDIGCGSGLSGETLTENGHQWIGLDVSQSMLNIALEREVEGDLLL
GDMGQGLALRPGIIDGAISISAVQWLCNADKSSHEPRLRLKAFFGSLYRCLARGARAVFQMYPENIAQRELILRSAMHAGFAGGVVIDYPHSAKSRKEYL
VLTCGPPSLSTAVPRGKGEDGESCSEDENSEENQMVCISDRNRPKKKQKITRKGKGRDWIFKKKEQLRRKGNAVPPDTRYTGRKRKARF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57280 RID2 root initiation defective 2, S... Potri.001G338700
[exp]
0 1
AT4G37090 unknown protein Potri.007G034600
[exp]
8.12 0.8128
AT1G75670 DNA-directed RNA polymerases (... Potri.005G236800
[exp]
11.91 0.7964
AT5G52820 WD-40 repeat family protein / ... Potri.009G058000
[exp]
13.60 0.7715
AT4G32605 Mitochondrial glycoprotein fam... Potri.010G244500
[exp]
17.32 0.7594
AT1G29250 Alba DNA/RNA-binding protein (... Potri.018G029300
[exp]
25.92 0.7464
AT1G71430 unknown protein Potri.015G035700
[exp]
38.88 0.6745
AT5G64650 Ribosomal protein L17 family p... Potri.007G107100
[exp]
39.66 0.7576
AT5G23300 PYRD pyrimidine d (.1) Potri.005G089700
[exp]
40.64 0.7371
AT3G46210 Ribosomal protein S5 domain 2-... Potri.018G043600
[exp]
41.95 0.7242
AT1G63780 IMP4 Ribosomal RNA processing Brix ... Potri.003G201100
[exp]
44.37 0.7619 Pt-IMP4.2

Potri.001G338700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.