Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40640 718 / 0 unknown protein AT3G27390 714 / 0 unknown protein AT4G12680 422 / 2e-141 unknown protein AT4G37030 358 / 7e-117 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042400 [exp] 401 / 2e-133 AT4G37030 707 / 0.0 unknown protein Potri.014G170800 [exp] 377 / 6e-124 AT4G12680 685 / 0.0 unknown protein Potri.007G035400 [exp] 375 / 2e-123 AT4G12680 411 / 9e-138 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032110 [exp] 761 / 0 AT3G27390 728 / 0.0 unknown protein Lus10022317 [exp] 744 / 0 AT3G27390 722 / 0.0 unknown protein Lus10014575 [exp] 732 / 0 AT5G40640 714 / 0.0 unknown protein Lus10016056 [exp] 424 / 3e-142 AT4G12680 749 / 0.0 unknown protein Lus10014881 [exp] 417 / 5e-142 AT3G27390 380 / 3e-128 unknown protein Lus10025177 [exp] 416 / 8e-139 AT4G12680 738 / 0.0 unknown protein Lus10011021 [exp] 368 / 2e-120 AT4G37030 698 / 0.0 unknown protein Lus10001003 [exp] 360 / 3e-117 AT4G37030 707 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G338900.6 pacid=42790074 polypeptide=Potri.001G338900.6.p locus=Potri.001G338900 ID=Potri.001G338900.6.v4.1 annot-version=v4.1 ATGGAACCCCCGAAGGAGATTTTGTCTTCTTTATGGAACTTTATTATTTTTCTGCCTTTCTTCTTTGGGCTTCTGGTTCTTGGGACCGTTAAAGGTGTTG TTTTCTGCCCGTTGGTATGCCTTATCATGACCATTGGAAACTCTGCTATAATACTGGGTCTTTGGCCACTGCATATTGTCAAGACATATTATTCAATTTT GAGAACTAAACATATAGGGCCAGTTCTGAAGATTGTGCTATGTATATGCCTACCAGCTACCCTGATTCTGTGGCTAGTTCTTGGCATTGTTGGGAGTATC ATAGGTGGAGCACTCTATGGGCTTCTTTCACCAATATTTGCCACTTTCGATGCTGTTGGAGAAAGGAAGACTAATATGCTTTACCATTGTTTTTATGATG GAACTTGGGACACTGTAAAAGGCAGTTTCACCGTTGTCAGAGACTTTGGAGATGTTTGTTATCATTCTTACTTCTCACTTTTGGATGACCTGCGGCAAGG GGCCCCAGATGTGAAATATTATGAAATCAGATTGCTTCCTCTTCCCGGTGCTATTATTGCTGCTTCACTTGGTATCGTTTTTGACTTTCCGCTGGTCTCA CTTATTGCCATCTGCAAAAGCCCATACATGCTTTTTAAGGGGTGGCATCGATTGTTTCATGACCTCATAGGGCGTGAAGGCCCTTTCTTGGAGACGATAT GTGTACCTTTTGCAGGCCTTGCTATCCTCCTCTGGCCATTGGCTGTTGTTGGGGCTGTTTTGGGTTCCATGGTATCAAGTATCTTCCTTGGTGCTTATGC AGGCGTGGTTGTTTATCAGGAGTCTTTTTGGTTCGGGCTTTGCTATATTGTCGCATCCTTGGCCATTTATGATGAGTACAGCAACGACATTCTTGACATG CCAGAAGGATCTTGCTTTCCAAGGCCCAAATACCAAAAGGATCCCAAGCTGACAAAGACCACCTCTCGTGCAGCTTCCTTTTCAGGGTCCACTTCTGTTC GAAATCCTCTTTCCCGCGGAGGTTCATTCAATCACCCTATGGTTGATCTTAAGCCACTTGAGCTACTTGATCGCATATTTAAAGAGTGTCAACACCATGG TGAGATTTTTGTTTCTGAAGGACTGATAACACAACAAGACATTGACGATGCAAAGTCTGGCAAGGGTAGCAGAGTGATTAGCATTGGTTTACCAGCTTAT TGCATTCTTCAGGCACTGTTGCGCTCTGTAAAGGCCAATTCTGTGGGAATTTTGTTGACTGATGCAGGCGACAATGTCACTGAGATAACTAGCACAAACA GACCGAAAGATACCTTCTATGAGTGGTTTCTTAACCCCTTTTTGATCATCAAAGACCAGATTAAAGCAGAAAACCTTTCTGAGGAAGAAGAGGGATATCT CGGCAGATTAGTATTGTTGAATGGTGATCCCACAAAGTTGAAAAGTTTAAATAGTGGTCCACCACCTGAGTCTGAACGTAAACGTGCTGAACTCGATGCG CTAGCTCGAAGGCTTCAAGGGATTACCAAATCTGTCTCGAGGTATCCTACTTCAAGACGTAACTTTGACCATCTTGTCAAGAACTTATCAGAAAATCTAG CTAAGAAGAATGGTGAGACCAAAGCAATCAACGCAATTCCGAGATCAAAAAGCGCCTTTGCCAGGATGTTTAGCCAGAACTCTTTTAAAAAGAAAACAAG CTATCATGGTTCTTCTGATCAAGAGACAGAATCAATTTCCGCAAGGAATGTGGAAATCCACATTGTATGA
AA sequence Show only first row Show all	>Potri.001G338900.6 pacid=42790074 polypeptide=Potri.001G338900.6.p locus=Potri.001G338900 ID=Potri.001G338900.6.v4.1 annot-version=v4.1 MEPPKEILSSLWNFIIFLPFFFGLLVLGTVKGVVFCPLVCLIMTIGNSAIILGLWPLHIVKTYYSILRTKHIGPVLKIVLCICLPATLILWLVLGIVGSI IGGALYGLLSPIFATFDAVGERKTNMLYHCFYDGTWDTVKGSFTVVRDFGDVCYHSYFSLLDDLRQGAPDVKYYEIRLLPLPGAIIAASLGIVFDFPLVS LIAICKSPYMLFKGWHRLFHDLIGREGPFLETICVPFAGLAILLWPLAVVGAVLGSMVSSIFLGAYAGVVVYQESFWFGLCYIVASLAIYDEYSNDILDM PEGSCFPRPKYQKDPKLTKTTSRAASFSGSTSVRNPLSRGGSFNHPMVDLKPLELLDRIFKECQHHGEIFVSEGLITQQDIDDAKSGKGSRVISIGLPAY CILQALLRSVKANSVGILLTDAGDNVTEITSTNRPKDTFYEWFLNPFLIIKDQIKAENLSEEEEGYLGRLVLLNGDPTKLKSLNSGPPPESERKRAELDA LARRLQGITKSVSRYPTSRRNFDHLVKNLSENLAKKNGETKAINAIPRSKSAFARMFSQNSFKKKTSYHGSSDQETESISARNVEIHIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40640			unknown protein		Potri.001G338900 [exp]	0	1
AT5G12370		SEC10	exocyst complex component sec1...		Potri.002G164100 [exp]	9.48	0.8300
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Potri.008G054500 [exp]	14.49	0.8536	Pt-ATGGT.1
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.015G071400 [exp]	19.18	0.7906
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G015000 [exp]	20.12	0.8411
AT2G40316			unknown protein		Potri.008G073200 [exp]	33.27	0.8037
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Potri.014G034700 [exp]	33.36	0.7850
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	34.14	0.8241
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060000 [exp]	34.95	0.8233
AT1G15780			unknown protein		Potri.003G013000 [exp]	39.42	0.8106
AT5G01980			RING/U-box superfamily protein...		Potri.006G112100 [exp]	42.08	0.7688

Compare expression of checked genes

Potri.001G338900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.