Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14390 510 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 502 / 4e-179 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 483 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 416 / 6e-145 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 370 / 1e-127 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 333 / 7e-114 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 320 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 316 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 304 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 279 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090800 [exp] 551 / 0 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 526 / 0 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 430 / 3e-150 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 418 / 1e-145 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 409 / 2e-142 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 407 / 2e-141 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G117633 [exp] 375 / 1e-129 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 375 / 3e-129 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 323 / 1e-109 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022307 [exp] 585 / 0 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000544 [exp] 552 / 0 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 495 / 4e-176 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 495 / 2e-168 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035148 [exp] 413 / 9e-144 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 411 / 4e-143 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 357 / 7e-122 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 350 / 2e-119 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10036842 [exp] 345 / 7e-117 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028497 [exp] 329 / 2e-111 AT5G38220 466 / 2e-166 alpha/beta-Hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G340000.1 pacid=42788298 polypeptide=Potri.001G340000.1.p locus=Potri.001G340000 ID=Potri.001G340000.1.v4.1 annot-version=v4.1 ATGGGAGGGGTAACATCATCAATGGCAGCAAAGTTTGCTTTTTTTCCACCAAACCCACCATCATACAAGCTAGTAACTGATGAATTAACAGGTCTATTGC TACTGAGCCCATTTCCTCATCGTGAAAATGTTGAAATCTTGAAATTGCCAACAAGGAAAGGTACAGATATTGTGGCAATGTATATAAGGCATCCTTTGGC TACTTCCACCTTGCTTTATTCTCATGGAAATGCTGCCGATCTGGGTCAGATGTATGAGCTTTTCATTGAGTTGAGCATCCACTTAAGGGTCAATCTCATG GGGTATGACTATTCTGGGTATGGGCAATCGTCGGGAAAGCCGAGTGAGCAGAATACATATGCTGATATTGAAGCTGCATACAAGTGTCTAGAAGAAAGCT ATGGTACCAAGCAGGAAGACATAATCCTTTATGGGCAATCTGTTGGAAGTGGCCCCACGTTAGATCTTGCTGCTCGACTGCCTCAGTTACGGGCTGTTGT TCTGCATAGTCCCATACTCTCAGGATTAAGAGTCATGTATCCTGTTAAGCGTACATACTGGTTTGACATTTATAAGAATATTGACAAAATCCCACTAGTA AATTGTCCAGTTCTCATCATGCATGGAACTTCAGATGAAGTTGTCGATTGCTCCCATGGTAAGCAATTATGGGAACTCTGTAAAGAAAAGTACGAACCAC TTTGGCTTAAAGGAGGGAACCATTGTGATTTAGAGCACTATCCAGAGTATATCAGGCATCTGAAGAAGTTCATATCAACTGTGGAGAAATCTCCTTCTCA AAGATACAGTTCCAGGAGAAGTACAGATCAGTTTGAGCAGTCACGGAAGAGTACTGATGTCTTTGAGGTTTCAAGGAAAAGCACAGATCGAAGAGAGAAA CCAAGGCAGAGTACTGACAGGCTCGAGAAACCAAAAATTCAATCTAATCATGTTGACAAGCTAGAAAAACTAAAAAATCTGTCAAATAATGCTGATAAGC TAGAAAAGTTAAGGATGTCATTTGATCAAATGGAAAGGTCTCGGAGGAGTGTTGATTGCCATGAGAAATCCCGGAAAAGCATCGACCACCAATTGGAAAG AGCACGGAAAAGTGTTGACAGGTTGGAAAGAATACGGACTGGTTGA
AA sequence Show only first row Show all	>Potri.001G340000.1 pacid=42788298 polypeptide=Potri.001G340000.1.p locus=Potri.001G340000 ID=Potri.001G340000.1.v4.1 annot-version=v4.1 MGGVTSSMAAKFAFFPPNPPSYKLVTDELTGLLLLSPFPHRENVEILKLPTRKGTDIVAMYIRHPLATSTLLYSHGNAADLGQMYELFIELSIHLRVNLM GYDYSGYGQSSGKPSEQNTYADIEAAYKCLEESYGTKQEDIILYGQSVGSGPTLDLAARLPQLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPLV NCPVLIMHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDLEHYPEYIRHLKKFISTVEKSPSQRYSSRRSTDQFEQSRKSTDVFEVSRKSTDRREK PRQSTDRLEKPKIQSNHVDKLEKLKNLSNNADKLEKLRMSFDQMERSRRSVDCHEKSRKSIDHQLERARKSVDRLERIRTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14390			alpha/beta-Hydrolases superfam...		Potri.001G340000 [exp]	0	1
AT3G13980			unknown protein		Potri.006G144700 [exp]	2.44	0.8673
AT2G25270			unknown protein		Potri.006G258700 [exp]	3.00	0.8987
AT5G67130			PLC-like phosphodiesterases su...		Potri.005G140100 [exp]	4.24	0.8548
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.019G030800 [exp]	7.07	0.8586	SYP111.2
AT5G41760			Nucleotide-sugar transporter f...		Potri.001G094600 [exp]	8.36	0.8505
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	10.24	0.8576
AT1G11915			unknown protein		Potri.011G007900 [exp]	12.96	0.8442
AT5G55650			unknown protein		Potri.001G367100 [exp]	15.49	0.8403
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.002G124800 [exp]	16.12	0.8507
AT3G59680			unknown protein		Potri.019G112300 [exp]	16.30	0.8448

Compare expression of checked genes

Potri.001G340000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.