Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01680 724 / 0 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein AT3G01670 440 / 2e-143 SEOa sieve element occlusion a, unknown protein AT1G67790 150 / 4e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G340300 [exp] 1426 / 0 AT3G01680 718 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340600 [exp] 1409 / 0 AT3G01680 746 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340200 [exp] 1405 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340500 [exp] 1400 / 0 AT3G01680 730 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.017G071000 [exp] 1264 / 0 AT3G01680 693 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050300 [exp] 832 / 0 AT3G01680 577 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050501 [exp] 820 / 0 AT3G01680 575 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.008G183200 [exp] 816 / 0 AT3G01680 576 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050701 [exp] 779 / 0 AT3G01680 534 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022305 [exp] 1155 / 0 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 1105 / 0 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 1103 / 0 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022306 [exp] 1082 / 0 AT3G01680 735 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 1029 / 0 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10034567 [exp] 833 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 823 / 0 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022304 [exp] 786 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000551 [exp] 722 / 0 AT3G01680 539 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000547 [exp] 704 / 0 AT3G01680 481 / 2e-163 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14576 [poplar] [flax] SEO_N Sieve element occlusion N-terminus PF14577 [poplar] [flax] SEO_C Sieve element occlusion C-terminus
Representative CDS sequence Show only first row Show all	>Potri.001G340400.2 pacid=42790213 polypeptide=Potri.001G340400.2.p locus=Potri.001G340400 ID=Potri.001G340400.2.v4.1 annot-version=v4.1 ATGGCATCAGGCCTTCCTCTCAGGCTCCCTGCCCCGGGTTTTAATGCGAGCCAGCAACTGATCAAGAGTGACCGCGGCAGCATGCTAACAATGTCTGATG ACAATGTGATGATGAAACAAATTGTAGGAACTCATGCTCCTGATGGCCGAGAGGTTGATGTCAAACCTCTTCTCCATCTTGTTGAAGACATCCTCAAACG TGCCACCCAGCAAATCGATACCTCTCTGACGACTTCCCAAGCCCATGCTGAATTGGAGGACAAGACTCACCAAGTCAATTTTGTTTCCATGCTCGATGCA CTGTCGTATACAATAGACAGAATTTCCTGCGAGATTGCCTACAAGGCACTGGGTGGGACAGATGCCCACGCAACAACTGTCTCACTTTTCAACATGCTAA CAAGCTATTCCTGGGATGCCAAGCTTGTGCTCACCTTGGCAGCTTTTGCTTTGAATTATGGAGAATTCTGGCTGCTTGCCCAGATTTACTCATCAAACGA TCTTGCCAAATCCATGGCAATCCTCAGGCAACTGCCTAGCATCATGGAACACTCAGGGCCCTTGAAGCCTCGCTTCGATGCCATTAACAATTTGATCAAG GTCATGATGGACGTGGCTAGGTGCGTGGTTGAGTTCAAGGATCTACCGCCAGCTTACATTTCTAATGAAGTACCAGCATTGTCCACAGCCATGGCCCATA TCCCTACTGCTGTCTACTGGACCATGAGGAGTGTTGTGGCTTGTGCGGCTCAGATTACTAGCCTCACTACCATGGGACACGAGTTTTCTATATCAACCAC TGTGGCATGGGAGCTATCCACCTTGGCTCACAAACTCAGCAACATACTTGACCATCTCAGGAAGCAATTGGATACTTGCTACCAATACATAGATGAAAAG AGGAATGTCGAATCCTTTCAAATGCTAAAGAATCTCTTTGAAATGATCCACATTGACAACATGAAGGTCCTAAAGGCCCTGATTTATGCCAAGGATGATA TCCAGCCACTTATAGATGGCTCTTCCAAGAAAAGAGTCCATCTTGATGTGCTAAGAAGGAAAAATGTGCTATTGCTCATTTCTGGCCTCGACATGTCAAC CGATGAGCTTTCAATTCTTGAACAAATATACAATGAATCCAGGCAACACGGACCTAGGCTGGATAGTCAGTATGAGGTGGTCTGGGTCCCAATTGTGGAC CGTTCAGTCCAGTGGAGTGATCCAATGAAGGGGAAATTTGAAAGCATGCAGTCTTCAATGCCATGGTTCACAGTGTACCACCCTTCACTGATTGAGAAGG CAGTCATTAGGTTCATCAAGGAGGTGTGGCACTTCCGGAACAAGCCTATTCTTGTGGTGCTTGACCCTCAAGGCAAGGTGGTTTGCCCAAATGCACTCCA CATGATGTGGATCTGGGGAAGCAATGCCTTCCCTTTCACTAGCTTGAGAGAGGAATCTCTCTGGAAGGATGAGACATGGAGGCTTGAGCTTCTAGTTGAT GGCATTGACCCAGTGATTCTTAATTGGATCAAGGAAGGAAAATACATTTTCATGTACGGAGGAGACGACGATGAATGGGTGAGGAAGTTCACAAACACCG CACGTGCTGTGGCGCAGGCAGCCAGCATTCCCCTGGAGATGGTTTATGTGGGGAAGAGCAGCAAAAGGGAGAAAATCCGGCGAGTCATAGCGACAATCAC CGTGGAGAAGCTCAGTTACGTCTGGCAAGACCTTACCATGATATGGTTCTTTTGGACCAGGCTAGAGAGTATGCTGTACTCCAAGATTCAGTTAGGCAAG CTTGATGACCATGATCCTATGATGCAAGAAATCAAGAAGTTGCTTAGCTACGACAGAGAAGGTGGATGGGCTGTGCTTAGCAATGGGTCTAATGTTGTGG TCAATGGTCACAAGACCACAGCTTTGCAAACATTGCTTGAGTATGACTTGTGGAAGGAACAAGTGCCTGTCAAGGGCTTTGATTTGGCCTACCGTGATCA CCAAGGCAGGATCCATGACATTTCTCGTCCTTGCTGCCGCTTCGATTTCCCAATGACTATGGGTAGGATCCCTGAGACCATGAAATGCCCAGAGTGCAAC CGCACCATGGAGAAATTCTCCACTTTCCTTTGCTGCCATGATGAGGTCATTCCAGACGAGCTCTTCAAGTAA
AA sequence Show only first row Show all	>Potri.001G340400.2 pacid=42790213 polypeptide=Potri.001G340400.2.p locus=Potri.001G340400 ID=Potri.001G340400.2.v4.1 annot-version=v4.1 MASGLPLRLPAPGFNASQQLIKSDRGSMLTMSDDNVMMKQIVGTHAPDGREVDVKPLLHLVEDILKRATQQIDTSLTTSQAHAELEDKTHQVNFVSMLDA LSYTIDRISCEIAYKALGGTDAHATTVSLFNMLTSYSWDAKLVLTLAAFALNYGEFWLLAQIYSSNDLAKSMAILRQLPSIMEHSGPLKPRFDAINNLIK VMMDVARCVVEFKDLPPAYISNEVPALSTAMAHIPTAVYWTMRSVVACAAQITSLTTMGHEFSISTTVAWELSTLAHKLSNILDHLRKQLDTCYQYIDEK RNVESFQMLKNLFEMIHIDNMKVLKALIYAKDDIQPLIDGSSKKRVHLDVLRRKNVLLLISGLDMSTDELSILEQIYNESRQHGPRLDSQYEVVWVPIVD RSVQWSDPMKGKFESMQSSMPWFTVYHPSLIEKAVIRFIKEVWHFRNKPILVVLDPQGKVVCPNALHMMWIWGSNAFPFTSLREESLWKDETWRLELLVD GIDPVILNWIKEGKYIFMYGGDDDEWVRKFTNTARAVAQAASIPLEMVYVGKSSKREKIRRVIATITVEKLSYVWQDLTMIWFFWTRLESMLYSKIQLGK LDDHDPMMQEIKKLLSYDREGGWAVLSNGSNVVVNGHKTTALQTLLEYDLWKEQVPVKGFDLAYRDHQGRIHDISRPCCRFDFPMTMGRIPETMKCPECN RTMEKFSTFLCCHDEVIPDELFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340400 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	1.41	0.9902
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.017G071000 [exp]	2.00	0.9876
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	2.44	0.9868
AT5G51160			Ankyrin repeat family protein ...		Potri.014G051100 [exp]	2.44	0.9780
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.001G078800 [exp]	2.64	0.9747
AT5G62200			Embryo-specific protein 3, (AT...		Potri.010G214400 [exp]	2.82	0.9849
AT5G20860			Plant invertase/pectin methyle...		Potri.006G135100 [exp]	4.69	0.9607
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.006G251300 [exp]	5.47	0.9635
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340300 [exp]	5.47	0.9821
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.002G043800 [exp]	6.92	0.9550

Compare expression of checked genes

Potri.001G340400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.