Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24770 322 / 2e-110 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 316 / 1e-108 CP31B chloroplast RNA-binding protein 31B (.1) AT2G37220 183 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60000 157 / 7e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 154 / 1e-44 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G52150 124 / 2e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 111 / 7e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G53460 107 / 5e-27 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT1G01080 103 / 5e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G21660 100 / 6e-26 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G086500 [exp] 330 / 2e-113 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.012G090200 [exp] 328 / 7e-113 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.016G090700 [exp] 198 / 1e-62 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 172 / 2e-52 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 165 / 1e-49 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 160 / 1e-47 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G068300 [exp] 147 / 2e-42 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.006G202000 [exp] 145 / 2e-41 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.001G141300 [exp] 120 / 4e-32 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041952 [exp] 268 / 3e-89 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10017962 [exp] 267 / 4e-89 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10002222 [exp] 197 / 5e-62 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 195 / 5e-61 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 177 / 3e-54 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 155 / 1e-43 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10029372 [exp] 149 / 8e-43 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 146 / 9e-42 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023723 [exp] 140 / 3e-39 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10035678 [exp] 118 / 3e-31 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G340800.1 pacid=42787903 polypeptide=Potri.001G340800.1.p locus=Potri.001G340800 ID=Potri.001G340800.1.v4.1 annot-version=v4.1 ATGGCTGAGACCCGGTTGATGTCCGTATACAGAACTACGAACACAGTCTTCGATACATCAATTAAGAGCCCATTTATCTCAATAACCTCAAAACCCATAA AGGTCGTCTTTTCAACATCTTTCCCTTCATGGGTATCTCTCAAAACCTCCAATTTTTCGACTTTCAATACAATCCCTCTTGTTGCACAGACCTCAGATTG GGCCCAGCAAGACGAGGAGGATACAGTGACTCTTGGAGAGGAGAGTTTTGGAGATGGAAGTGAAGAGACTTTTCCAGAACCACCTGAAGAGGCTAAGCTA TATGTGGGGAATTTGCCTTATGATGTTAATAGTGAAAACCTGGCTCAGCTATTTGATCAGGCTGGGACTGTTGAGGTTGCTGAGATAATTTATAACAGGG AGACAGATCAAAGTAGAGGGTTTGGTTTTGTTACAATGAGTACAGTTGATGAAGCTGAGAAGGCCATAGAGAAGTTCCACCGCTATGATTTGAATGGAAG ATTTTTAACAGTGAATAAGGCTGCTCCTAGAGGCTCACGGCCAGAAAGGCCAAGTGTGTTCAAAATTGCATATAGAATCTATGTTGGTAACCTGCCTTGG CAAGTGGATGATGCTCGTCTGGAGCAAGTATTCAGTGAACATGGACAGGTTGTGAATGCAAGGGTCGTTTGTGACCGAGAAACAGGCCGTTCACGTGGTT TTGGCTTTGTTACAATGTCCAGTGAGACAGAGTTGAATGATGCCATTGCTGCTCTTGATGGACAGAGTTTGGATGGCAGGGCGATCACTGTAAATATAGC CCAAGAACGTCCAAGGCGTGGCTCATTCTAG
AA sequence Show only first row Show all	>Potri.001G340800.1 pacid=42787903 polypeptide=Potri.001G340800.1.p locus=Potri.001G340800 ID=Potri.001G340800.1.v4.1 annot-version=v4.1 MAETRLMSVYRTTNTVFDTSIKSPFISITSKPIKVVFSTSFPSWVSLKTSNFSTFNTIPLVAQTSDWAQQDEEDTVTLGEESFGDGSEETFPEPPEEAKL YVGNLPYDVNSENLAQLFDQAGTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRFLTVNKAAPRGSRPERPSVFKIAYRIYVGNLPW QVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSSETELNDAIAALDGQSLDGRAITVNIAQERPRRGSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.001G340800 [exp]	0	1
AT1G62850			Class I peptide chain release ...		Potri.001G117500 [exp]	1.41	0.9187
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.010G128500 [exp]	2.23	0.9429
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.007G067500 [exp]	2.64	0.9080	Pt-UBQ7.1
AT3G57190		PrfB3	peptide chain release factor 3...		Potri.006G045200 [exp]	7.74	0.9095
AT1G49510		EMB1273	embryo defective 1273 (.1)		Potri.005G149500 [exp]	8.36	0.9007
AT1G17100			SOUL heme-binding family prote...		Potri.001G067100 [exp]	10.09	0.8679
AT1G07830			ribosomal protein L29 family p...		Potri.002G185800 [exp]	11.66	0.8596
AT5G57060			unknown protein		Potri.003G044400 [exp]	12.00	0.8687
AT5G13470			unknown protein		Potri.003G203900 [exp]	13.41	0.8792
AT3G45050			unknown protein		Potri.009G008400 [exp]	13.63	0.9164

Compare expression of checked genes

Potri.001G340800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.