Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56510 275 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341100 [exp] 42 / 0.0004 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032099 [exp] 256 / 4e-84 AT3G56510 259 / 4e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014585 [exp] 243 / 2e-78 AT3G56510 248 / 3e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G341300.1 pacid=42789897 polypeptide=Potri.001G341300.1.p locus=Potri.001G341300 ID=Potri.001G341300.1.v4.1 annot-version=v4.1 ATGGTCGAGAAAACTTTTAAAGATGAAGCTACCGAGGAAAAGGGAGAGCGTGCCAGACTGGAAAGAATGAGTGAGGAACATAAAGAACAAGAACAAGTGT TGTTTTTAGAGGAGGGAAAGAAGAAAAAGTTAAAGAAAGAAGCAGAAAAGGCTCAGAAGCGTGGTGTTTGTTACATAAGTAGAGTTCCTCCTGGTATGGA TCATGTTAAGCTTCGTCAACTTCTCAGTCAGTACGGTGAAATTCAACGAATTTACCTTGCTCCTCAAAATAGTTCTTCTATTGATAAAGTGAATGATAAC AATAAGAGTAGAAAAAGAGGTGGTGGAGCTAAAGCTCAAGCATACTCTGAAGGGTGGGTTGAGTTTGCTAGTAAAAGTAATGCTAAAAGGGTTGCTAATT TGTTAAATGGTGAACAAATAGGTGGGAAGAAGCGGTCACAATTCTATTATGATCATTGGAATATCAAGTATCTAAGTAAATTCAAATGGGATAATCTTAC AGACGAAATTGCTTACAAGAAAGCTATTCGGGAACAAAAATTAGCGTTAGAAATTTCTGCTGCAAAGAGGGAGCGGGATTTCTATCTCAAAAAAGTTGAC CAGTCTCGTGCCTTAAGCTCTATTGAAGAACGAATGAAGAAGAAGCAGAAGGTCCAACAAGAATCTGGAGGTGAACTTTCTGTTGCCCCACAGAAACCAC CGGTTTGCCGACAATTCCCACAGAAAAAACCAATTGCTGAAAGAGAGAGAAGCAAACCTCAACTCTCTAAAGATGTCCTGGCAGGGGTATTTGGTGGTTC ATAG
AA sequence Show only first row Show all	>Potri.001G341300.1 pacid=42789897 polypeptide=Potri.001G341300.1.p locus=Potri.001G341300 ID=Potri.001G341300.1.v4.1 annot-version=v4.1 MVEKTFKDEATEEKGERARLERMSEEHKEQEQVLFLEEGKKKKLKKEAEKAQKRGVCYISRVPPGMDHVKLRQLLSQYGEIQRIYLAPQNSSSIDKVNDN NKSRKRGGGAKAQAYSEGWVEFASKSNAKRVANLLNGEQIGGKKRSQFYYDHWNIKYLSKFKWDNLTDEIAYKKAIREQKLALEISAAKRERDFYLKKVD QSRALSSIEERMKKKQKVQQESGGELSVAPQKPPVCRQFPQKKPIAERERSKPQLSKDVLAGVFGGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Potri.001G341300 [exp]	0	1
AT5G25800			Polynucleotidyl transferase, r...		Potri.005G186600 [exp]	3.16	0.8106
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.001G364500 [exp]	8.71	0.8429
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Potri.003G104900 [exp]	10.95	0.8522	EIF2.4
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.005G126700 [exp]	19.79	0.8243
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	24.18	0.8177
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Potri.005G245100 [exp]	25.61	0.7824	TIF3.9
AT5G19300			unknown protein		Potri.010G091400 [exp]	27.96	0.8003
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	30.72	0.7691
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	31.46	0.7857
AT3G26050			TPX2 (targeting protein for Xk...		Potri.008G180900 [exp]	31.93	0.8019

Compare expression of checked genes

Potri.001G341300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.