Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35850 571 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 90 / 5e-19 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37230 85 / 2e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 84 / 6e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 83 / 1e-16 RPF2 rna processing factor 2 (.1) AT4G19440 83 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G16710 82 / 1e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 82 / 2e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 82 / 2e-16 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 80 / 1e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019000 [exp] 88 / 2e-18 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G217600 [exp] 86 / 2e-17 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G081700 [exp] 85 / 2e-17 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.010G077400 [exp] 82 / 2e-16 AT2G37230 1050 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 81 / 4e-16 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 81 / 5e-16 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G006800 [exp] 81 / 5e-16 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G173400 [exp] 80 / 1e-15 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 80 / 1e-15 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003653 [exp] 634 / 0 AT4G35850 612 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022296 [exp] 625 / 0 AT4G35850 598 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041421 [exp] 89 / 2e-18 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023650 [exp] 87 / 5e-18 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10034924 [exp] 85 / 2e-17 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10038788 [exp] 85 / 3e-17 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039071 [exp] 84 / 6e-17 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10037515 [exp] 83 / 1e-16 AT1G79490 1296 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037517 [exp] 83 / 1e-16 AT1G79490 1299 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 83 / 1e-16 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G341400.1 pacid=42792478 polypeptide=Potri.001G341400.1.p locus=Potri.001G341400 ID=Potri.001G341400.1.v4.1 annot-version=v4.1 ATGAAATTTCTTCTTCAAGGTGCTCAAAGATCACTGCTCCGCGGCTTCGGAAGGCGATACTTGGCTACTTCAACAGAACAGTACGCCAAACGAAATTATG CAAATAATTTATCAGAGTACAACACTGTTTTCACTTCTCTAACTGCTAAACGCAGGCATTATCTGTTGAGAGATGCATACGATGATATGGTGTTAGACGG AGTGCAGCCGAGTAGAGATACATTTCATTCTTTGATTGCTGGAACAATGAAAGGCTCGCGTTTGCAAGATGCTTTCTATTTTAGAGATGAGATGAAAACT ATGGGTTTGCTTCCTGATGTTGTGTTGTACAACTTTTTGATATCAACCTGCGGGAAAAGCAAGAATTCTGACCAGGCAATTAAGATTTTGGACGAGATGA AGAATTCTGGAGTGAAGCCGAATGGACAAACCTATATCTGTCTACTTAATGCGTGTGCTGCTGCTGGTCGGTTAGATCCAGTGTATGCAATTGTTCGTGA TATGACTTCAGCTGGTGTTGGTTTGAACAAGTTCTGCTATGCAGGACTTATAGCTGCACACAAGAACAAGACACCCATAGCAGAAGATGTAGCCACCAAA ATTATTGAGCTTGTTGAGCAGTCAAAGGGTTGGTCATCAGTTGAAGCATCAACAGGAGAAAATGCTGAAAATGTGATGATGAATGTTTCTGAAGAGGAAT TATACAATTTACCAACTGCAGACTATGTTCATAAGCGTCGAGGATTTTTGCGTAAGGAATTGACTGTCTACCATGTGGCCTTTCATGCTTTTACAGAGCT TAAAAATGTTCAGGCTATGGAAGTTCTTGTGGAGATGCTTAAGAGTGAAAAAAAGGATCCTGATGTCTTTATTCTCTTGCAAATAATGAGGTGCTATCTA CTTTCTGGAGACCTTGATCGTGCTCTTCAAGTTTTTAATGATTATATGAATTCCATGAAGCCTTCTTTTATAGAACTATACACGGTACTTATTGAGGGAG CCATGGTAGGGCATACTCCAAGAGGAATGCAAATTGCTTTAGACAAGCTGGAAGAAATGACGCAGAGAAGCTTCTTCTTGTTTCCAAAAATTGCAAATGA TCTACTCCTCATAGCAGCTGGTGATAAGAAAGGTGGATATACCACTGCCAATTATATTTGGGACCTGACACAAGCTCGCAAAATGCCACTTTCATTTCCT GCGGTGGAAGCATATTACAATGGGTTAAAAGGGCGCTGTGTACCGGAAGATGATCCCAGATGGTTGCTAGTTTCTAGTACATACGAGAGGCTACGCCCAA GATCTGGAGCAGGAACTGGACCTGCAAGACAGCAGGCGCAGAATATCAAAACTGATACCAAAGAAAGAATGGCTTTTTAA
AA sequence Show only first row Show all	>Potri.001G341400.1 pacid=42792478 polypeptide=Potri.001G341400.1.p locus=Potri.001G341400 ID=Potri.001G341400.1.v4.1 annot-version=v4.1 MKFLLQGAQRSLLRGFGRRYLATSTEQYAKRNYANNLSEYNTVFTSLTAKRRHYLLRDAYDDMVLDGVQPSRDTFHSLIAGTMKGSRLQDAFYFRDEMKT MGLLPDVVLYNFLISTCGKSKNSDQAIKILDEMKNSGVKPNGQTYICLLNACAAAGRLDPVYAIVRDMTSAGVGLNKFCYAGLIAAHKNKTPIAEDVATK IIELVEQSKGWSSVEASTGENAENVMMNVSEEELYNLPTADYVHKRRGFLRKELTVYHVAFHAFTELKNVQAMEVLVEMLKSEKKDPDVFILLQIMRCYL LSGDLDRALQVFNDYMNSMKPSFIELYTVLIEGAMVGHTPRGMQIALDKLEEMTQRSFFLFPKIANDLLLIAAGDKKGGYTTANYIWDLTQARKMPLSFP AVEAYYNGLKGRCVPEDDPRWLLVSSTYERLRPRSGAGTGPARQQAQNIKTDTKERMAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35850			Pentatricopeptide repeat (PPR)...		Potri.001G341400 [exp]	0	1
AT4G12600			Ribosomal protein L7Ae/L30e/S1...		Potri.019G087100 [exp]	3.31	0.8602
AT5G60390			GTP binding Elongation factor ...		Potri.010G218700 [exp]	3.74	0.8559
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	3.87	0.8432
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.003G181200 [exp]	4.12	0.8190
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.012G006700 [exp]	4.24	0.8289
AT5G35530			Ribosomal protein S3 family pr...		Potri.012G076800 [exp]	7.74	0.8288
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.009G149400 [exp]	8.48	0.8400	HD2.2,HDT901
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	8.83	0.8073	Pt-RPL3.3
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319800 [exp]	9.79	0.8315
AT5G39850			Ribosomal protein S4 (.1)		Potri.016G076800 [exp]	12.84	0.8514

Compare expression of checked genes

Potri.001G341400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.