Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PHOT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45780 1389 / 0 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT5G58140 1065 / 0 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT4G26610 356 / 3e-112 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G47750 354 / 1e-110 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G55910 350 / 2e-110 D6PK D6 protein kinase (.1) AT2G44830 358 / 7e-110 Protein kinase superfamily protein (.1) AT5G40030 346 / 1e-108 Protein kinase superfamily protein (.1) AT3G52890 356 / 1e-107 KIPK KCBP-interacting protein kinase (.1.2) AT2G36350 355 / 4e-107 Protein kinase superfamily protein (.1) AT1G79250 344 / 4e-107 AGC1.7 AGC kinase 1.7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209700 [exp] 1113 / 0 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 688 / 0 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.016G004900 [exp] 357 / 2e-111 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 357 / 3e-111 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 356 / 1e-109 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 353 / 1e-108 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 351 / 3e-108 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.009G170550 [exp] 331 / 1e-106 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.017G075400 [exp] 340 / 4e-106 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036144 [exp] 1293 / 0 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10018122 [exp] 1231 / 0 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10026572 [exp] 1075 / 0 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 1001 / 0 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 939 / 0 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10016629 [exp] 355 / 1e-110 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10020571 [exp] 357 / 3e-110 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10042911 [exp] 350 / 5e-110 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10038753 [exp] 349 / 1e-108 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10022534 [exp] 348 / 2e-108 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0183 [poplar] [flax] PAS_Fold PF13426 [poplar] [flax] PAS_9 PAS domain
Representative CDS sequence Show only first row Show all	>Potri.001G342000.3 pacid=42790268 polypeptide=Potri.001G342000.3.p locus=Potri.001G342000 ID=Potri.001G342000.3.v4.1 annot-version=v4.1 ATGGAAGCAACGGACAAGTCATCCAAGCAATCTTCTGGTAACGTGCCACCACTGCCAAGAGACTCCCGGGGATCACTTGAAGTATTCAACCCCTCCAGTG CCTACTTGAACCGACCCACTAACCCAGCATTTCGTTCATCAAACCCCACCTGGAAAAGCTGGGTTGATTCAAGTGCTAAAAATGAACCCGAACCCGAAGA AGCACCCATCACCACCTCATGGATGGCCCTCAAGGACCCGGTCCCTACCCCACCACCCCTACCGCAATCCCAGCAAGAAGAGAAAAAACCGAAACAACAA CTGTCGGGTGAAATTGGGGTGGCAACAAAAAGAGCGGCTGAGTGGGGCCTGGTGCTAAAAACCGACGACGAGACAGGCAAACCACAAGGGGTTAGCGTGC GAACTTCGGGTGGGGATGACCCGAATGCAAAACCGGGTACATCAAGAAGGGACTCGAACAACTCGGTGAGAAATTCTGGCGAGTTATCAGATGACGGAGG GACTAGTAACAACAGTAATATCCCAAGAGTGTCTGAAGACATAAGAAATGCACTGTCCACCTTCCAACAAACATTTGTGGTATCAGATGCCACAAAACCA GACTATCCAATCTTGTATGCAAGTGCTGGCTTCTTTAAAATGACAGGATATACCTCTAAGGAGGTCATTGGCAGGAATTGTCGGTTCTTACAGGGTGCAG GCACCGACCCAGAAGATGTAGCGAAAATTAGGGAGGCTTTACGAGGAGAGGGTACTTACTGTGGGAGATTGTTGAATTATAAGAAAGATGGTTCTCCCTT TTGGAACCTTCTTACAATTGCACCCATCAAGGACGATTCTGGCAAAGTCCTCAAATTCATTGGAATGCTAGTGGAGGTTAGCAAGCATACTGAGGGGTCC AAGGATAAGACCTTGCGTCCCAATGGATTGCCTGGATCCTTGATCCGATATGACGCACGTCAAAAAGAAATGGCTACAAGTTCTGTAACAGAACTTGTTC AAGCAGTGAACAGACCCCGTGCACTCAGTGAATCAACCAATCGTCCGTTGATGAGAAAATCAGAAGGTGGTGGAGAAGGGGAAAGAAAAGGAGCTATAGG AAGGCGAAACTCGGAGAATGTGGCTCCAAATAGACGGAATTCTCACGGGGGTACTCGAAACTCAATGCAACGTATCAGTGAGTTGCCGGAAAAGAAACCA AGAAAATCTAGCCGCCTTTCTTTCATGGGTCTCATGAGAAAAAGTACACATTCCAATGATGAGAGCTTTGACGTTGGAATTACTCTCGATGATGATTTTG AGAGTGATGACGACGATGATGACGCAAGGCTTGATAGCCTTGATGACAAGGTGAGGAAGAAGGAAATGAGAAAGGGTATTGATCTCGCTACCACTCTTGA ACGTATAGAGAAAAACTTTGTCATCACTGATCCAAGGCTGCCTGATAATCCCATTATATTTGCCTCTGATAGCTTCTTAGAGCTTACAGAGTACAGTCGT GAAGAAATCTTGGGAAGAAATTGCAGATTCTTGCAAGGGCCTGAAACCGATCCAGCGACTGTGAGGAAAATAAGGGAAGCAATTGATAACCAGACAGATG TCACCGTTCAGCTGATTAACTATACCAAGAGTGGTAAGAAGTTCTGGAACCTGTTCCATCTGCAGCCTATGCGTGACCAAAAGGGAGAAGTGCAGTATTT TATTGGAGTGCAATTAGATGGCAGTGAGCATGTTGAGCCACGTACCAATAGTATCCCAGAGGCAACAGCTATAGAGAGTGAACAACTGGTGAAACAAACT GCAGAAAATGTTGATGACGCAGCGAGAGAACTTCCGGATGCTAATATGAGACCAGAAGATTTGTGGGCTAATCATTCAAAAGTGGTTTATCCAAAGCCTC ACAGAAAGGACAGCCCATCATGGAAAGCGATTCAAAAGATTCTAGAAAGTGGAGAACAATTAGGCCTAAAGCATTTTAGGCCAGTAAAGCCCTTGGGATC CGGTGACACTGGCAGCGTGCATTTGGTAGAATTGTATGGAACTGGTCAGTTTTTTGCCATGAAGACTATGGACAAGGCTGCTATGCTCAACCGCAATAAG GTGCATAGAGCTTGTGCAGAGAGAGAAATTCTTGACATGTTGGACCACCCTTTTCTTCCTGCGTTGTATGCTTCATTTCAGACGAAAACACATATCTGTC TGATAACTGATTACTGCCCTGGTGGCGAGCTCTTCCTGCTTTTGGACAGACAGCCAAAGAAGGTGCTGAAGGAAGATGCTGTGAGATTTTATGCTGCAGA GGTAGTCATTGCATTGGAGTACCTTCATTGTCAAGGGATAATTTACAGGGACTTAAAGCCTGAGAATGTTCTACTTCAGAGCAATGGGCATGTGGCCTTG ACAGATTTTGATCTATCATGTTTAACATCCTGCAAACCCCAGCTCTTGATTCCAAGTACAAATGAAAAGAAAAGGCACCGTAAACATCAGCAGGCGCCGC CAGTCTTTATGGCTGAACCAATGAGAGCTTCAAATTCTTTTGTTGGAACTGAAGAGTATATAGCTCCGGAAATCATAACTGGGGCAGGCCATACCAGTGC CGTGGACTGGTGGGCTCTAGGAATTCTGCTATATGAAATGCTTTATGGATACACACCATTCAGGGGAAAGACCAGGCAAAAGACATTCGCCAACATTCTT CACAAGGATCTCAAATTCCCTGGAAGTATACCGGTTAGCCTCAACGCGAAGCAGTTAATGTACCGTTTGCTGCATAGGGACCCCAAAAACAGGTTGGGTT CGCGAGAAGGAGCGAATGATATTAAACGGCATCCATTCTTCAAGGGTGTCAACTGGGCACTGGTTCGCTGCTTGAATCCTCCTGAGCTCGAGGCACCATT TTTGGAGTCCGGAGAAGAAAAGGAAGCCAAAGTTGTGGATCCTGGAATGCAGGATCTACAGACAAATATCTTCTGA
AA sequence Show only first row Show all	>Potri.001G342000.3 pacid=42790268 polypeptide=Potri.001G342000.3.p locus=Potri.001G342000 ID=Potri.001G342000.3.v4.1 annot-version=v4.1 MEATDKSSKQSSGNVPPLPRDSRGSLEVFNPSSAYLNRPTNPAFRSSNPTWKSWVDSSAKNEPEPEEAPITTSWMALKDPVPTPPPLPQSQQEEKKPKQQ LSGEIGVATKRAAEWGLVLKTDDETGKPQGVSVRTSGGDDPNAKPGTSRRDSNNSVRNSGELSDDGGTSNNSNIPRVSEDIRNALSTFQQTFVVSDATKP DYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAGTDPEDVAKIREALRGEGTYCGRLLNYKKDGSPFWNLLTIAPIKDDSGKVLKFIGMLVEVSKHTEGS KDKTLRPNGLPGSLIRYDARQKEMATSSVTELVQAVNRPRALSESTNRPLMRKSEGGGEGERKGAIGRRNSENVAPNRRNSHGGTRNSMQRISELPEKKP RKSSRLSFMGLMRKSTHSNDESFDVGITLDDDFESDDDDDDARLDSLDDKVRKKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSR EEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSEHVEPRTNSIPEATAIESEQLVKQT AENVDDAARELPDANMRPEDLWANHSKVVYPKPHRKDSPSWKAIQKILESGEQLGLKHFRPVKPLGSGDTGSVHLVELYGTGQFFAMKTMDKAAMLNRNK VHRACAEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFLLLDRQPKKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLLQSNGHVAL TDFDLSCLTSCKPQLLIPSTNEKKRHRKHQQAPPVFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANIL HKDLKFPGSIPVSLNAKQLMYRLLHRDPKNRLGSREGANDIKRHPFFKGVNWALVRCLNPPELEAPFLESGEEKEAKVVDPGMQDLQTNIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	0	1	Pt-PHOT1.1
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	1.73	0.9205
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	1.73	0.9317
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	2.00	0.9315	ATML1.2
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	4.89	0.9100
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	5.29	0.8761
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	6.70	0.8832
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	8.77	0.8665
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.005G156600 [exp]	9.16	0.8493
					Potri.007G049700 [exp]	9.74	0.8512
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	10.19	0.8731

Compare expression of checked genes

Potri.001G342000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.