Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14430 892 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G04430 776 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 764 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 756 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G10200 475 / 1e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04060 470 / 2e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 457 / 2e-153 Putative methyltransferase family protein (.1) AT2G39750 456 / 8e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 448 / 1e-150 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 442 / 6e-148 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036800 [exp] 774 / 0 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 752 / 0 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G077100 [exp] 474 / 3e-160 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G043600 [exp] 468 / 9e-159 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 455 / 1e-152 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 445 / 2e-149 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 443 / 1e-148 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 434 / 3e-145 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 431 / 2e-143 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022291 [exp] 974 / 0 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10003656 [exp] 968 / 0 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011815 [exp] 782 / 0 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021177 [exp] 688 / 0 AT1G04430 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10038973 [exp] 488 / 2e-166 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 487 / 2e-166 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 452 / 4e-152 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 449 / 9e-151 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 449 / 2e-150 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 447 / 2e-149 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G342300.1 pacid=42788169 polypeptide=Potri.001G342300.1.p locus=Potri.001G342300 ID=Potri.001G342300.1.v4.1 annot-version=v4.1 ATGAAGCAAAAAAGCGAAAAGCTTTACACTGCCAAGCAGATAACCTCTGCTCTGATCGCCTTCATTTTTCTTCTGGGCTTGCTCTGTCTGTACTATGGAT CTTCTTTTGTTCCTGCTCTCTCCAGATCTGAAGGCGAACATGACGGCACGGATCCTGTTCTCGGCGGGAATATCCGGGATTTTGATGATTTGTTTGAGGA CCAAGAACATAACCCAGAAGTCCCCAAAAGCATTCCTATCTGTGATATAAAACACTCAGAGTTGATACCATGTTTGGATAGAAACCTTATCTACCAATTG AAATTGAAGCCAAATTTGACTTTAATGGAGCATTATGAAAGGCATTGCCCCCCTCCGGAGCGGCGTTTTAATTGTCTTATACCACCTCCTATTGGTTACA AGATCCCTATAAGGTGGCCGGAGAGTAGAGATGAGGTTTGGAAAGCAAATATACCTCATACACATCTCGCGCAAGAGAAGTCGGATCAGAATTGGATGGT AGTGAATGGGGAGAAGATAAATTTTCCTGGTGGAGGAACCCATTTTCATGATGGAGCAAATAAGTACATTGTTTCTCTTGCTAGGATGCTTAAATTTCCC AATGATAAACTTCACAATGGTGGGAATATCCGAAATGTTCTTGACGTTGGTTGTGGAGTTGCAAGTTTTGGAGCTTATCTTCTTTCCCACAGCATTATAG CTATGTCCATTGCACCTAATGATGTACATGAGAATCAAATACAGTTTGCGCTGGAGAGAGGGATTCCTTCAACTCTTGGTGTCTTAGGCACTAAAAGACT TCCTTATCCAAGTAGATCATTCGAACTGGCTCACTGTTCTCGATGCCGTATTGATTGGCTCCAGAGAGATGGAATCCTCTTGTTAGAACTTGATAGATTA CTAAGACCTGGAGGGTATTTTGCCTACTCCTCTCCTGAAGCCTATGCACTTGATCCAGAAAATCGAAGGATCTGGAATGCAATGCATGACCTTTTGAGAA GAATGTGTTGGAGGGTTGCTGTGAAGAAAGATCAGACTGTTATTTGGCAAAAACCATTGGGTAATGGCTGTTACTTGAAGAGGGATCCTGGGACGCAGCC CCCGCTATGCAGTACTGGTGATGACCCAGATGCAACTTGGAATGTGCACATGAAGGCCTGCATAGCCCCCTACTCAGCAAAGATGCACAAGGAAAGAGGA AGCGGGCTAGTTCCTTGGCCAAAGAGGCTTACTGCAGCACCCCCTCGATTGGAAGACATTGGTGTCAGTCCTGAACAATTCCATGAAGACACTAACATTT GGCAATTTAGAGTGAATGAGTACTGGAAGCAGATGAAATCTGTTGTACGGAAGAATTACTTCAGAAATGTCATGGATATGAACTCAAACCTTGGAGGTTT TGGTGCTGCTCTCAAAGATACAGATGTCTGGGTGATGAACGTTGCTCCAGTCAACATGTCTGCTAGATTGAAGATCATTTACGATCGTGGCTTAATTGGA ACAGTTCATGATTGGTGTGAAGCATTTTCTACATACCCACGTACATACGATCTTCTTCATGCCTGGGGAGTATTTTCTGAGATTCAGGAGCATGGGTGCG GTGTGGAGGATCTATTAATTGAAATGGATCGGATTCTAAGGCCTGATGGGTTTGTCATAATAAGAGACAAGCCCGTAATTATAAACTATATCCGAAAATT TGTGACTGCCTTAAGGTGGGATCGTTGGTTATCAGAGGTTGAACCAAGGAGTGATGCTCTCTCCTTGAGTGAAGAACGAGTTTTGATTGCAAGAAAGAAG TTATGGAGTGAAGGGGATTCAGCAATGTGA
AA sequence Show only first row Show all	>Potri.001G342300.1 pacid=42788169 polypeptide=Potri.001G342300.1.p locus=Potri.001G342300 ID=Potri.001G342300.1.v4.1 annot-version=v4.1 MKQKSEKLYTAKQITSALIAFIFLLGLLCLYYGSSFVPALSRSEGEHDGTDPVLGGNIRDFDDLFEDQEHNPEVPKSIPICDIKHSELIPCLDRNLIYQL KLKPNLTLMEHYERHCPPPERRFNCLIPPPIGYKIPIRWPESRDEVWKANIPHTHLAQEKSDQNWMVVNGEKINFPGGGTHFHDGANKYIVSLARMLKFP NDKLHNGGNIRNVLDVGCGVASFGAYLLSHSIIAMSIAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRL LRPGGYFAYSSPEAYALDPENRRIWNAMHDLLRRMCWRVAVKKDQTVIWQKPLGNGCYLKRDPGTQPPLCSTGDDPDATWNVHMKACIAPYSAKMHKERG SGLVPWPKRLTAAPPRLEDIGVSPEQFHEDTNIWQFRVNEYWKQMKSVVRKNYFRNVMDMNSNLGGFGAALKDTDVWVMNVAPVNMSARLKIIYDRGLIG TVHDWCEAFSTYPRTYDLLHAWGVFSEIQEHGCGVEDLLIEMDRILRPDGFVIIRDKPVIINYIRKFVTALRWDRWLSEVEPRSDALSLSEERVLIARKK LWSEGDSAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14430			S-adenosyl-L-methionine-depend...		Potri.001G342300 [exp]	0	1
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	3.16	0.9045
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	5.09	0.9064
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.008G005200 [exp]	7.93	0.8511	DWF5.3
AT5G07590			Transducin/WD40 repeat-like su...		Potri.001G079100 [exp]	8.12	0.8507
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	8.83	0.8898
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.011G063300 [exp]	11.48	0.8356
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254432 [exp]	11.61	0.8687
AT1G44760			Adenine nucleotide alpha hydro...		Potri.005G177100 [exp]	12.00	0.8719
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	15.19	0.8970
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.018G137500 [exp]	16.24	0.8792

Compare expression of checked genes

Potri.001G342300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.