Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40570 196 / 3e-63 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2) AT5G14440 166 / 3e-50 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022288 [exp] 264 / 2e-88 AT5G14440 205 / 7e-66 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2) Lus10003658 [exp] 260 / 1e-87 AT5G40570 211 / 6e-69 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [poplar] [flax] DoxD-like PF05477 [poplar] [flax] SURF2 Surfeit locus protein 2 (SURF2)
Representative CDS sequence Show only first row Show all	>Potri.001G342400.1 pacid=42792529 polypeptide=Potri.001G342400.1.p locus=Potri.001G342400 ID=Potri.001G342400.1.v4.1 annot-version=v4.1 ATGAGTGAAGAGAGCACGAAGATGGAGACGAAGGAAGGGAGCAACTTGTTGGGCTCACCTACCTTCACACAGCTCGAAAATGGCAGGTTCAAGTGCCTAG AGAGTGGACACGAAGTGTTAGCCAAAGACAAAGAATCCTATTCACACAGTAAACGCTGCCGTTTGGGTCTGATAGACTTTGCTCTAGCCAACAACAAACC CCCTCTCAACATGTTCAAGCAGGACCCTCTCTCTCGTTCAAAGTTGATATGTAAATTAACTGGGGATACTGTCAACAAGTCTGAGGAACATATTTGGAAG CACATCAATGGGAAGAGGTTTCTTAACAAATTAGAGCAAAAGGAAATGGAGAAATTGGAATCCAATGGACTGGTAGCGGAGGAAGTTGAGGAAGAATTGA AGTCGAGCCAGGATGGTGCTAAGAAAAAGAAAAAGAATAAGAAGAAGCAAAACAAGGTTGAGGAAATTATTTCTCAAGTAAGGGATTCTTCTGATAAGGA CAGTGATTTGGAAGAAACTGATTTCTGGATTCCACCTGCTGGAGAACGCTGGGACTTTGACGATGGAGGAGATCGGTGGGGTTCTGATGCGGAGTCCGAG CACGAAAGCCAGGAAGAAAATCCAGCAGATGATGCAGTCGAAGATAATGGCGAGGAATCAAAAGAGCTCTCTACGCGGGCTAAGAGAATGTCAATTGAAA TTGGACCCAGCAGCTCTGCTTCTAGAAAGAAGAAGAGTAAGAAGGATCCTGCAAGCTGA
AA sequence Show only first row Show all	>Potri.001G342400.1 pacid=42792529 polypeptide=Potri.001G342400.1.p locus=Potri.001G342400 ID=Potri.001G342400.1.v4.1 annot-version=v4.1 MSEESTKMETKEGSNLLGSPTFTQLENGRFKCLESGHEVLAKDKESYSHSKRCRLGLIDFALANNKPPLNMFKQDPLSRSKLICKLTGDTVNKSEEHIWK HINGKRFLNKLEQKEMEKLESNGLVAEEVEEELKSSQDGAKKKKKNKKKQNKVEEIISQVRDSSDKDSDLEETDFWIPPAGERWDFDDGGDRWGSDAESE HESQEENPADDAVEDNGEESKELSTRAKRMSIEIGPSSSASRKKKSKKDPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40570			Surfeit locus protein 2 (SURF2...		Potri.001G342400 [exp]	0	1
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	5.83	0.8719
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	12.96	0.8704
AT5G60840			unknown protein		Potri.012G065400 [exp]	14.96	0.8732
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	18.33	0.8622
AT1G08410			P-loop containing nucleoside t...		Potri.009G017000 [exp]	20.49	0.8284
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	24.81	0.8356	Pt-IMP4.2
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Potri.012G092800 [exp]	25.09	0.8420
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.016G113500 [exp]	25.65	0.8614	HPT3.1
AT4G32605			Mitochondrial glycoprotein fam...		Potri.008G015600 [exp]	25.69	0.8675
AT2G37000	TCP	TCP11	TCP family transcription facto...		Potri.016G094800 [exp]	32.72	0.8394

Compare expression of checked genes

Potri.001G342400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.