Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27460 374 / 7e-132 AtSGF29a SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) AT5G40550 352 / 4e-123 AtSGF29b SaGa associated Factor 29 b, SGF29 tudor-like domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014593 [exp] 350 / 5e-122 AT3G27460 384 / 2e-135 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) Lus10032093 [exp] 285 / 3e-94 AT3G27460 282 / 8e-93 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF07039 [poplar] [flax] DUF1325 SGF29 tudor-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G342700.1 pacid=42790045 polypeptide=Potri.001G342700.1.p locus=Potri.001G342700 ID=Potri.001G342700.1.v4.1 annot-version=v4.1 ATGGCGTCATCGGACATTGGGTTAATTTTGGAGAACTCGAAAGAGCTCGATCGGTTAAGGAAAGAGCAAGAGGACGTTCTTTTAGATATTAACAAAATGC ACAAGAAGCTTCAAGCTACTCCTGAGGTGGTTGAGAAGCCTGGTGATACTTCGTTGGCAAAGCTCAAAACTTTATATACTCAGGCCAAAGAACTTTCAGA GAGTGAAGTAAGTGTTTCCAGTGCCCTGTTGACTCAATTGGATGCTCTGTTACCATCTGGACCTCCAGGTCAACAACGAAGAAGGATAGAAGGTAATGAT CAGAAAAGGAAAAGAATCAAAGCCGATTCAGATATCTCAAGGCTCTCTCCTGCAGTAAGAAGTCAACTTGAAGCATGTGCTAGTCTAAAGGGTGAACAGG TAGCAGCTAGGGTCACAGGTGATAATGCTGAAAAGGATGAGTGGTTTGTTGTAAAAGTGATTCATTTTGATAGGGAAACAAAAGAATTCGAAGTACTTGA TGAGGAGCCGGGAGATGACGAAGAGAGTGGTGGCCAAAGAAAGTACAAGCTGCCCATGTCATGTATTATACCTTTCCCCAAGCGAAATGATCCTTCTAGT GCCCCAGATTTTCCTCCTGGGAGACATGTTTTGGCTGTCTATCCAGGAACAACAGCACTTTATAAGGCAACTGTTGTGAGCCCCCTTCGGAAGAGGAAGA TAGATGATTATTTGCTGGAGTTTGATGACGATGAAGAAGATGGAGCCTTGCCTCAGAGGATTGTTCCCTTCTATAAGGTGGTTCCCTTACCAGAAGGGCA TCGTCAATGA
AA sequence Show only first row Show all	>Potri.001G342700.1 pacid=42790045 polypeptide=Potri.001G342700.1.p locus=Potri.001G342700 ID=Potri.001G342700.1.v4.1 annot-version=v4.1 MASSDIGLILENSKELDRLRKEQEDVLLDINKMHKKLQATPEVVEKPGDTSLAKLKTLYTQAKELSESEVSVSSALLTQLDALLPSGPPGQQRRRIEGND QKRKRIKADSDISRLSPAVRSQLEACASLKGEQVAARVTGDNAEKDEWFVVKVIHFDRETKEFEVLDEEPGDDEESGGQRKYKLPMSCIIPFPKRNDPSS APDFPPGRHVLAVYPGTTALYKATVVSPLRKRKIDDYLLEFDDDEEDGALPQRIVPFYKVVPLPEGHRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Potri.001G342700 [exp]	0	1
AT4G26240			unknown protein		Potri.006G153800 [exp]	1.00	0.9135
					Potri.002G088800 [exp]	9.16	0.9025
					Potri.004G169000 [exp]	13.56	0.8719
AT5G49710			unknown protein		Potri.005G157500 [exp]	16.15	0.8409
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Potri.013G158400 [exp]	20.49	0.8267	Pt-EIF2.3
AT5G57950			26S proteasome regulatory subu...		Potri.006G184600 [exp]	24.71	0.8220
AT4G30010			unknown protein		Potri.006G075600 [exp]	24.97	0.8515
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Potri.008G035800 [exp]	27.16	0.7894	Pt-ARA6.2
AT1G44760			Adenine nucleotide alpha hydro...		Potri.002G084600 [exp]	28.12	0.8727
AT1G61150			LisH and RanBPM domains contai...		Potri.004G037600 [exp]	29.17	0.8526

Compare expression of checked genes

Potri.001G342700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.