Plant FIBer expression Database

Potri.001G342933 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG01010 989 / 0 ATCG01010.1, NDHF NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein (.1)
ATMG00513 245 / 6e-73 NAD5.1, ATMG00513.1, NAD5A NADH DEHYDROGENASE 5.1, NADH DEHYDROGENASE SUBUNIT 5, NADH dehydrogenase 5A (.1)
ATMG01320 72 / 2e-13 NAD2.2, ATMG01320.1, NAD2B NADH DEHYDROGENASE 2.2, NADH dehydrogenase 2B (.1)
AT2G07689 63 / 7e-11 NADH-Ubiquinone/plastoquinone (complex I) protein (.1)
ATCG01250 60 / 4e-09 ATCG01250.1, NDHB.2 NADH-Ubiquinone/plastoquinone (complex I) protein (.1)
ATCG00890 60 / 4e-09 ATCG00890.1, NDHB.1 NADH-Ubiquinone/plastoquinone (complex I) protein (.1)
ATCG01050 58 / 1e-08 ATCG01050.1, NDHD NADH-Ubiquinone/plastoquinone (complex I) protein (.1)
ATMG00580 54 / 2e-07 ATMG00580.1, NAD4 NADH dehydrogenase subunit 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G084150
[exp]
387 / 6e-131 ATCG01010 334 / 6e-111 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein (.1)
Potri.007G062522
[exp]
60 / 6e-10 AT2G07689 420 / 5e-152 NADH-Ubiquinone/plastoquinone (complex I) protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0425 ComplexI-N PF00361 Proton_antipo_M Proton-conducting membrane transporter
CL0425 PF00662 Proton_antipo_N NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
CL0425 PF01010 Proton_antipo_C NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus
Representative CDS sequence
>Potri.001G342933.1 pacid=42788877 polypeptide=Potri.001G342933.1.p locus=Potri.001G342933 ID=Potri.001G342933.1.v4.1 annot-version=v4.1
ATGGAACATACATATCAATATTTATGGATTATATCTTTCGTTACACTTCCAGTCCCTATGTTAATAGGAATGGGACTGCTACTTTTTCCGGTGTCAACAA
AAAAACTTCACCGTATATGGGCTTTTCCCAGTGTTTTATTGTTAAGTATAGTTATGGTTTTTTCGATCGATCTGTTTATTCAGCAAATAAATAGCAGTTC
CATTTATCAATATGTATGGTCTTGGACCATCAACAATGATTTTTCCTTAGAGTTCGGGTACTTGATTGACCCACTTACTTCTATTTTGTTAATATTAATT
ACTACGGTTGGAATTTTGGTTCTTGTTTATAGTGACAGTTATATGTCTCATGATCAAGGCTATTTGAGATTTTTTGTTTATATGAGTTTTTTCAATACTT
CAATGCTGGGATTAGTTACCAGTTCGAATTTAATCCAAATTTATATCTTTTGGGAATTGGTTGGAATGTGCTCTTACCTATTAATAGGTTTTTGGTTCAC
ACGACCTATTGTGTCCAATGCTTGTCAAAAAGCATTCGTAACTAATCGTGTAGGCGATTTTGGTTTATTATTAGGAATTTTAGGTCTTTATTGGATAACA
GGCAGTTTCGAATTTCAGGATTTGTTTGAAATATTCAATAACTTGATTTATAATAATGATAATGAGGTTCATTTTTTATTTGTTACCTTGTGCGCTTTCC
TATTATTTTCCGGTGCAATTGCTAAATCGGCGCAATTCCCCCTTCATGTGTGGTTACCGGATGCCATGGAAGGACCTACCCCTATTTCGGCTCTAATACA
TGCTGCTACCATGGTAGCAGCGGGAATTTTTCTTGTAGCTCGACTTCTTCCTCTTTTCGTAGTTATACCTTACATAATGAAGCTAATAGCTTTGATAGGT
ATAATAACAGTACTATTAGGAGCCACTTTAGCTTTTGCTCAAAAAGATATTAAGAGAGGTTTAGCTTATTCTACAATGTCTCAATTGGGTTATACGATGT
TAGCTTTAGGTATGGGCTCCTATCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCGAAAGCATTGTTGTTTTTAGGATCTGGATCCATTATTCA
TTCAATGGAAGTTATTGTTGGCTATTCTCCGGATAAGAGTCAAAATATGGTTCTTATGGGTGGTTTAACAAAACATGTTCCAATTACAAAAATTGCTTTT
TTATTAGGAACCCTTTCTCTTTGTGGTATTCCACCTCTCGCCTGTTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTCGTATTCACCTATTTTCG
CAATAATAGCTTTTTCCACAGCAGGATTAACTGCATTTTATATGTTTCGGGTTTATTTACTTACTTTTGAAGGGCATTTAAATATTTATTTTCAAAATTA
TAGTGGTAAAAAAAACAGCGCATTCTATTCAATATCTTTATGGGGTAAACAGGGATCAAAAATCTTAAAAAAAAAAATGCGTTTATTACCTTTATTAACA
ATAAATAATAAAAATAATAATGAAAGAGCTTCTTTTTTTTGTTTTTTTTGGAAGAAAATATATCAAACTGGTGGTACTGTAAGAAAGATGACGTGTCCTT
TTATTACTATTAATCATTTTGGTACTAAAAGAATTTTTTCCTATCCCCAGGAATCGGATAATACTATATTATTTCCGATGCTTGTTTTGGTACTATTTAC
CTTGTTTATTGGAGCTATAGGAATACCTTTCAATCAATTCAATCAAGAAGAAATGAATTTTGATATATTATCCAAACTGTTAATTCCGTCTTTAAGTCTT
TTACATCAAAATCAAAATAAGTCTGTAGATTGGTATGAATTTGTAACAAATTCAACTTTTTCAGTCAGTATAGCTTCTTTTGGGATATTTATAGCGTCTT
CTTTATATAAGCCGATTTATTCATCCTTACAAAATTTGAAATTCCTTAATTTGGTTGCTAAAAAAGGTCCTAAGAGAATTCTTAGGGACAAAATAATAAA
TGTGATATATGATTGGTCCTATAATCGTGGTTACATAGATGTTTTTTATGCAATATCTTTAACAGAAGGCATAAGAAGATTGGCAGAATTAACTTCTTTT
TTTGATAGACGAGTAATTGATGGAATTACCAATGGAGTTGGTTTTACGAGTTTCTTTATAAGAGAAGGCATAAAATATATAAGAGGTGGTCGCATCTCTT
TTATATATATATATATATATATATATATA
AA sequence
>Potri.001G342933.1 pacid=42788877 polypeptide=Potri.001G342933.1.p locus=Potri.001G342933 ID=Potri.001G342933.1.v4.1 annot-version=v4.1
MEHTYQYLWIISFVTLPVPMLIGMGLLLFPVSTKKLHRIWAFPSVLLLSIVMVFSIDLFIQQINSSSIYQYVWSWTINNDFSLEFGYLIDPLTSILLILI
TTVGILVLVYSDSYMSHDQGYLRFFVYMSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIVSNACQKAFVTNRVGDFGLLLGILGLYWIT
GSFEFQDLFEIFNNLIYNNDNEVHFLFVTLCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVVIPYIMKLIALIG
IITVLLGATLAFAQKDIKRGLAYSTMSQLGYTMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEVIVGYSPDKSQNMVLMGGLTKHVPITKIAF
LLGTLSLCGIPPLACFWSKDEILNDSWSYSPIFAIIAFSTAGLTAFYMFRVYLLTFEGHLNIYFQNYSGKKNSAFYSISLWGKQGSKILKKKMRLLPLLT
INNKNNNERASFFCFFWKKIYQTGGTVRKMTCPFITINHFGTKRIFSYPQESDNTILFPMLVLVLFTLFIGAIGIPFNQFNQEEMNFDILSKLLIPSLSL
LHQNQNKSVDWYEFVTNSTFSVSIASFGIFIASSLYKPIYSSLQNLKFLNLVAKKGPKRILRDKIINVIYDWSYNRGYIDVFYAISLTEGIRRLAELTSF
FDRRVIDGITNGVGFTSFFIREGIKYIRGGRISFIYIYIYIYI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG01010 ATCG01010.1, ND... NADH-Ubiquinone oxidoreductase... Potri.001G342933
[exp]
0 1
AT1G55670 PSAG photosystem I subunit G (.1) Potri.011G168700
[exp]
7.87 0.9607 Pt-PSAG.2
AT5G09650 ATPPA6 pyrophosphorylase 6 (.1) Potri.001G286900
[exp]
9.53 0.9389
AT4G02530 chloroplast thylakoid lumen pr... Potri.018G129600
[exp]
12.84 0.9537
AT5G64040 PSAN, PSI-N photosystem I reaction center ... Potri.007G105900
[exp]
15.36 0.9548
AT4G24670 TAR2 tryptophan aminotransferase re... Potri.012G083300
[exp]
15.87 0.9237
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Potri.016G025000
[exp]
16.24 0.9455 AT103.1
AT2G06520 PSBX photosystem II subunit X (.1) Potri.006G222300
[exp]
17.14 0.9471
AT3G54890 LHCA1 photosystem I light harvesting... Potri.008G041000
[exp]
17.54 0.9422 2
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Potri.016G021800
[exp]
20.83 0.9383
AT1G08380 PSAO photosystem I subunit O (.1) Potri.004G199400
[exp]
25.80 0.9441

Potri.001G342933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.