Plant FIBer expression Database

Potri.001G342966 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG01040 205 / 2e-65 ATCG01040.1, YCF5 Cytochrome C assembly protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0328 2heme_cytochrom PF01578 Cytochrom_C_asm Cytochrome C assembly protein
Representative CDS sequence
>Potri.001G342966.1 pacid=42792528 polypeptide=Potri.001G342966.1.p locus=Potri.001G342966 ID=Potri.001G342966.1.v4.1 annot-version=v4.1
ATGATATTTTTGACTTTAGAACATATATTAACTCATATATCTTTTTCGGTCGTTTCAATTGTAATTATAATTCATTTTCTAACCTTATTAGTCAATGAAT
TCGTGGGACTCTATGATTCGTCAGAAAAAGGCATGTTAACTACTTTTTTCTGCCTAACAGGATTACTAATTACTCGTTGGATTTATTCGGGACATTTACC
AATAAGTGATTTATACGAATCATTAATATTTCTTTCATGGATTTTCTCTATTATTCATATGGTTCCATATTTTAAAAAACATAAAAATTATTTAAGCACA
ATAACCGCACCAAGTACTTTTTTTACCCAAGGCTTTGCTACTTGGGGTCTTTTAACCGACATGCATCAATCTAAAATCTTAGTACCTGCTCTCCAATCCC
AGTGGTTAATAATGCACGTAAGTATGATGGTATCGGGCTATGCAGCTCTTTTGTGTGGATCATTATTGTCAGCAGCACTTCTAGTAATTACATTTCGAAA
AGTCATAAGAATTGTTGGTAAAAACAATAATTTATTAAATGATTCATTTCCCGTTGATGAGATCCAATACATGATGGAAAAAAAAAGTATTTTAAAAAAT
ACTTTTTTTCCTTCTTCTAGAAATTATTACATGTTTCAATTGGTTCAACAATTAGATCATTGA
AA sequence
>Potri.001G342966.1 pacid=42792528 polypeptide=Potri.001G342966.1.p locus=Potri.001G342966 ID=Potri.001G342966.1.v4.1 annot-version=v4.1
MIFLTLEHILTHISFSVVSIVIIIHFLTLLVNEFVGLYDSSEKGMLTTFFCLTGLLITRWIYSGHLPISDLYESLIFLSWIFSIIHMVPYFKKHKNYLST
ITAPSTFFTQGFATWGLLTDMHQSKILVPALQSQWLIMHVSMMVSGYAALLCGSLLSAALLVITFRKVIRIVGKNNNLLNDSFPVDEIQYMMEKKSILKN
TFFPSSRNYYMFQLVQQLDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG01040 ATCG01040.1, YC... Cytochrome C assembly protein ... Potri.001G342966
[exp]
0 1
ATCG00380 ATCG00380.1, RP... chloroplast ribosomal protein ... Potri.013G163300
[exp]
2.44 0.9258
ATCG00720 ATCG00720.1, PE... photosynthetic electron transf... Potri.007G062202
[exp]
4.24 0.9143
ATCG00040 ATCG00040.1, MA... maturase K (.1) Potri.013G138201
[exp]
5.29 0.9177
ATCG00080 ATCG00080.1, PS... photosystem II reaction center... Potri.013G138690
[exp]
14.83 0.8634
ATCG00510 ATCG00510.1, PS... photsystem I subunit I (.1) Potri.013G162500
[exp]
15.16 0.8985
ATCG00580 ATCG00580.1, PS... photosystem II reaction center... Potri.013G161900
[exp]
19.07 0.8796
ATCG00570 ATCG00570.1, PS... photosystem II reaction center... Potri.013G162000
[exp]
22.24 0.8742
Potri.011G074100
[exp]
22.51 0.8374
ATCG00640 ATCG00640.1, RP... ribosomal protein L33 (.1) Potri.003G067400
[exp]
23.36 0.8529
ATCG00720 ATCG00720.1, PE... photosynthetic electron transf... Potri.011G113784
[exp]
23.49 0.8550

Potri.001G342966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.