Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14460 585 / 0 Pseudouridine synthase family protein (.1) AT3G57150 76 / 2e-14 ATNAP57, ATCBF5, NAP57 homologue of NAP57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044100 [exp] 84 / 5e-17 AT3G57150 729 / 0.0 homologue of NAP57 (.1) Potri.016G041200 [exp] 83 / 1e-16 AT3G57150 741 / 0.0 homologue of NAP57 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003661 [exp] 601 / 0 AT5G14460 628 / 0.0 Pseudouridine synthase family protein (.1) Lus10022284 [exp] 556 / 0 AT5G14460 551 / 0.0 Pseudouridine synthase family protein (.1) Lus10023565 [exp] 87 / 1e-17 AT3G57150 743 / 0.0 homologue of NAP57 (.1) Lus10040451 [exp] 84 / 8e-17 AT3G57150 582 / 0.0 homologue of NAP57 (.1) Lus10035418 [exp] 61 / 1e-09 AT3G57150 647 / 0.0 homologue of NAP57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [poplar] [flax] PseudoU_synth PF01509 [poplar] [flax] TruB_N TruB family pseudouridylate synthase (N terminal domain) CL0649 [poplar] [flax] PseudoU_synth PF16198 [poplar] [flax] TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G343100.1 pacid=42791259 polypeptide=Potri.001G343100.1.p locus=Potri.001G343100 ID=Potri.001G343100.1.v4.1 annot-version=v4.1 ATGGCTAAATCACTTTCTCTGCTCTGCTTCCTTCCAAAACCAATGGCCTTTTCAACAACAACGAAAGCAACATTCTATCCTTCTCTCTTTCCCTCAAAAA GACCCACTCTCTTAAACAAACCTATCTTCTCTCTATATCAAAATCTCTTCTCCACCACTTCTACTAGATACCCTCTTCAATATGAGATGATCATTAACCG CCCAGTTCAGCCCCAACGCCCCCAATCTCGGCCACAACCTGCTCGAGTCACTAGACCAGACTCAGACTCCGACTCAACTCAAAACCCAGATGCAGAACTT GGTCTTGATTCATGGGTTGATCGAAAACTGTCTCAAGATGAGATGGATAAGTCTAAAAGAAAGTATTATAGAAAGAGGAGGAAAAGAATGTATGGGTCAG ATTCTGATGAGGAAAATAAGAAAAATGAAGAGGGTTTTGTAGAGTTGAAGCCTGAAGTTGTAGAATTTCATAGGTTACATAAGAGAGAGGAGGAGTTATA TTTTTATGATGCTTTTGCTTATCCATGGGAGAAAGATAAGCATTATAAGATGGTTTATCAATTGGAGAAAAAGTATTTCCCTGACCAATGCCTTGATAAG GCATTTCTTGATCCTAAAGACTCAAATAATGTAAATCAAAGTGGGAAACCAAAGAAGACCAAGAGTGGGGTTAAGAGAGGAGAGAAGGAGAGAGATCATA GTGGGGTTGGAGAGGGAGAGGAAGATAAAAGGTTGGTTTTTTTTGACGAAGAGGAGAAGGGTGAGAGAGGGACTGATTTGAATGATAAGAAGGATGTTAC CGAGAGGAAAGTCGAGGAATTCTTTAAGTGTTTGAAAAAAGTTCCCAATAAGGATAATGAAGTGGATACTGGAGATCCTTATCTTTCTACAAGGAATGCT CTTCCACCAAGGTGGGATGGTCCTTATGGGACTGTGGTTTTGGTGAATAAGCCTAAAGGATGGACTTCATTTACAGTTTGTGGAAAGCTGCGTCGCCTGG TCAAAGTGAAAAAGGTGGGGCATGCTGGGACGCTTGATCCTATGGCAACTGGTTTATTGATTGTGTGTGTTGGTAAAGCCACAAAGTTGGTAGATAGATA TCAAGGTATGGTTAAGGGTTATAGTGGAGCGTTCCGTTTAGGGGAGGCTACTTCAACTTGGGATGCTGATTCACCGGTTATTCAACGTGAGCCTTGGGAG CACATTAAAGATGCTGACATTAAGAAAGCTGCTGCATCATTTCGTGGGGAGATATGGCAAGTTCCACCGATGTTCTCTGCAATCAAAGTTGGAGGTGAAA GGATGTATGAGAAAGCAAGGAAAGGAGAAAGCATTGAGCTCTCGCCTAGAAGAATTTCAATTTTTCAATTCGACATAGAGCGAAGCTTAGAGGACAGGCA AAATTTGATCTTCCGAGTGACATGCTCTAAAGGAACATACATTCGGTCACTCTGTGCAGATTTTGGAAAGGCTCTTGGAAGTTGTGCTCATTTAACTGCT CTTCGAAGAGATTCAATTGGTGAATATTCAGCAGAAGATGCATGGGAATTCAAAGAACTGGAAGAGGCAATAACTAAAAATTATTTCTAA
AA sequence Show only first row Show all	>Potri.001G343100.1 pacid=42791259 polypeptide=Potri.001G343100.1.p locus=Potri.001G343100 ID=Potri.001G343100.1.v4.1 annot-version=v4.1 MAKSLSLLCFLPKPMAFSTTTKATFYPSLFPSKRPTLLNKPIFSLYQNLFSTTSTRYPLQYEMIINRPVQPQRPQSRPQPARVTRPDSDSDSTQNPDAEL GLDSWVDRKLSQDEMDKSKRKYYRKRRKRMYGSDSDEENKKNEEGFVELKPEVVEFHRLHKREEELYFYDAFAYPWEKDKHYKMVYQLEKKYFPDQCLDK AFLDPKDSNNVNQSGKPKKTKSGVKRGEKERDHSGVGEGEEDKRLVFFDEEEKGERGTDLNDKKDVTERKVEEFFKCLKKVPNKDNEVDTGDPYLSTRNA LPPRWDGPYGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMVKGYSGAFRLGEATSTWDADSPVIQREPWE HIKDADIKKAAASFRGEIWQVPPMFSAIKVGGERMYEKARKGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTA LRRDSIGEYSAEDAWEFKELEEAITKNYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14460			Pseudouridine synthase family ...		Potri.001G343100 [exp]	0	1
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	4.58	0.9426
AT1G53800			unknown protein		Potri.001G161900 [exp]	9.38	0.9195
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.018G142100 [exp]	12.96	0.9338
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.008G017400 [exp]	21.35	0.9152
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	29.34	0.9320
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	29.56	0.9083
AT5G01590			unknown protein		Potri.016G123900 [exp]	31.14	0.9190
AT3G57990			unknown protein		Potri.001G145400 [exp]	32.03	0.9188
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G201400 [exp]	42.44	0.9009
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	47.14	0.9134

Compare expression of checked genes

Potri.001G343100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.