Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27530 1251 / 0 MAG4, GC6 MAIGO 4, golgin candidate 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035230 [exp] 1348 / 0 AT3G27530 1204 / 0.0 MAIGO 4, golgin candidate 6 (.1) Lus10032089 [exp] 1286 / 0 AT3G27530 1143 / 0.0 MAIGO 4, golgin candidate 6 (.1) Lus10000216 [exp] 540 / 0 AT3G27530 400 / 3e-132 MAIGO 4, golgin candidate 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04869 [poplar] [flax] Uso1_p115_head Uso1 / p115 like vesicle tethering protein, head region PF04871 [poplar] [flax] Uso1_p115_C Uso1 / p115 like vesicle tethering protein, C terminal region
Representative CDS sequence Show only first row Show all	>Potri.001G343500.1 pacid=42791416 polypeptide=Potri.001G343500.1.p locus=Potri.001G343500 ID=Potri.001G343500.1.v4.1 annot-version=v4.1 ATGGATTTGGTGTCCGGTTACAAGGGAATGGTTGGGCTTGTTTTCGGCAACGACAATTCTGGTTCTAATGAAGACAGCTATGTTGAAAGGTTACTTGATC GGATAAGCAATGGTGTCCTACCAGACGACAGGAGGAATGCTATGGCTGAGCTTCAGTCTGTTGTTGCTGAAAGTCGGGGTGCGCAGCTAGCTTTTGGAGC AATGGGGTTTCCTGTACTTATGGGTGTCTTAAAGGAGGAGCGAGATGATGTTGAAATGATTCGAGGTGCCCTAGAAACTCTTGTTAGTGCATTGACGCCT ATTGATCATGCAAAGGGGCCACAGAACGAGGTCCAACCAGCTTTAATGAATACTGATTTGCTTTCACGGGAAGCAGAAAACATCTCTCTCCTTCTCAGTT TATTGTCAGAAGAAGATTTCTATGTGCGATACTATACCCTTCAAATTTTGACTGCGCTTCTCACAAATTCTCAAAATAGGTTACAGGAAGCAATTCTGAC CATTCCACGTGGTATAACTCGGCTCATGGATATGCTTATGGATCGTGAGGTTATAAGAAATGAGGCCTTGCTGCTTCTTACCCACCTGACTCGAGAAGCT GAGGAGATTCAAAAAATTTTAGTCTTTGAAGGTGCATTTGAGAAAATTTTTAGCATTATCAAAGAGGAAGGAGGTTCAGAAGGCGGTGTTGTTGTGCAGG ACTGTCTTGAACTATTGAACAATCTTCTTCGCAACAATGCTTCCAATCAGGTACTCCTGAGGGAGACGTTGGGCTTTGATGCTATAATATCAATCTTGAA GCTACGTGGAAGTGCTTACAGTTTTACCCAACAGAAGACAATTAATCTGCTCAGTGCCTTGGAAACAATTAATTTGTTATTGATGGGAGGTTCAGAATCT GATCCTGGAAAAGATATGAATAAGCTGACAAATAGAACAGTCCTGGTTCAGAATAAAGTGTTTGACTATCTTCTATTGTTGGGTGTCGAAAGCCAATGGG CTCCTATTCCTGTACGTTGTGCGGCATTGCGGTGCATTGGTGATTTGATTGTTGGACACCCAAAGAATCTTGATACTCTTGCAAGCAAAGTTCTTGGTGA GCAGCCACAAGTAGAACCGGCTCTGAATTCTATTCTTCGAATCATTTTGCGGACATCCAGTGTGCAAGAGTTCATTGAAGCTGACCACGTTTTTAAGAGC TTTTGTGAGAGAAATTCTGATGGTCAAACAATGTTAGCATCCACATTAATACCTCAACCATATTCAATGACTCATGCTCCCATTGAAGAGGATGTGAGAA TGTCATTTGGAAGCATGCTGTTACATGGTCTTACTTTGGGTGAAAGTGATGGTGATCTTGAGACTTGTTGCAGGGCTGCGAGTGTGCTTTCTCATATACT CAGGGACAATATCCAGTGCAAGGAAAGGGTTCTGCGCATTGAACTTGAGTCGCCCACGCCATCCCTAGGAGCTCCAGAGCCACTAATGCACCGCATGGTT AAATACTTGGCCCTTGCTTCCAACATGAAAAATAAAGATGGAAAAACAAGTACAAAAGAGAACTCGTATGTTCAACCAATTATTCTGAAATTGCTGGTGA CCTGGCTAGCTGACTGCCCCAATGCAATTCAGTGCTTCCTAGCTTCACGTCCCCATCTAACATATTTGCTTGAGTTGGTGTCAAATCCGTCTGCAACTAT GTGCATAAGGGGGTTGGGAGCAGTTCTCTTAGGGGAGTGTGTTATTTACAACAAGTCTGGTGAGAGTGGAAAGGATGCTTTTACAGTAGTTGATGCCATA AGTCAGAAGATTGGACTCACATCATACTTTCTTAAGTTTGATGAAATGATGAAGAGCTTCCTTTTCTCCTCTGTTAAGCCAACAAAGCTTCATAAACCAT TGACGAGATCTGCTGCTGCTAGTATGGCAGAGATTGATGATGTTGATGAGCAGGATTCATCTGACCATAAGAATGAGGATCATCCTATACTTTCATCACT ATTTGATTCTCATTTTGTCAACTTTGTCAAGAGTTTGGAAGGAAATATCAGAGAAACAATTGTAGATGTATATAGTCGTCCAAAGAGTGAGGTGGCTGTT GTACCTGCAGAATTGGAGCTAAAGAGAGGAGAAAGTGACAAAGACTACATAGAACGGCTGAAATCATTTGTGCAGAAGCAATGCTCTGAGATACAGAATC TTCTTGGTCGGAATGCAACTCTGGCTGAGAACTTGACCAAGACAGGTGGGAGTGTCTCATCTCAACCTGAACAAAGGACAAGTGGGGGCTTAGACAGAGT CCAGGCAGAGACACTCCGGAGAGATCTCCAGGAAGCATCTCAACGAATAGAGATGCTCAAGGCAGAGAAAGCCAAAATAGAATCAGAGGCTTCCATGTAC CAGAATCTAGCTGGAAAGATGGAGTCCGATCTGAAGAGCCTATCCGATGCCTATAACAGTCTCGAACAGGCCAATTTCCATCTGGAGAAGGAAGTGAAAG CCTTGAAGAGTGGGGGAGCCTCAACACCTCCAGATGTTGAGGCGATAAGAGCAGAAGCCAGGGAAGAAGCCCAGAAGGAGAGCGAAGCGGAGCTGAATGA TTTGCTAGTGTGCCTTGGGCAAGAACAGAGCAGGGTCGAAAAGCTGAGCGCAAGGTTAATGGAGCTCGGGGAGGATGTGGATAAACTACTTGAAGGTGTT GGAGATGACATGGGGCTGCCCGAAGACAGCGAAAAGGAGGAAGACTAA
AA sequence Show only first row Show all	>Potri.001G343500.1 pacid=42791416 polypeptide=Potri.001G343500.1.p locus=Potri.001G343500 ID=Potri.001G343500.1.v4.1 annot-version=v4.1 MDLVSGYKGMVGLVFGNDNSGSNEDSYVERLLDRISNGVLPDDRRNAMAELQSVVAESRGAQLAFGAMGFPVLMGVLKEERDDVEMIRGALETLVSALTP IDHAKGPQNEVQPALMNTDLLSREAENISLLLSLLSEEDFYVRYYTLQILTALLTNSQNRLQEAILTIPRGITRLMDMLMDREVIRNEALLLLTHLTREA EEIQKILVFEGAFEKIFSIIKEEGGSEGGVVVQDCLELLNNLLRNNASNQVLLRETLGFDAIISILKLRGSAYSFTQQKTINLLSALETINLLLMGGSES DPGKDMNKLTNRTVLVQNKVFDYLLLLGVESQWAPIPVRCAALRCIGDLIVGHPKNLDTLASKVLGEQPQVEPALNSILRIILRTSSVQEFIEADHVFKS FCERNSDGQTMLASTLIPQPYSMTHAPIEEDVRMSFGSMLLHGLTLGESDGDLETCCRAASVLSHILRDNIQCKERVLRIELESPTPSLGAPEPLMHRMV KYLALASNMKNKDGKTSTKENSYVQPIILKLLVTWLADCPNAIQCFLASRPHLTYLLELVSNPSATMCIRGLGAVLLGECVIYNKSGESGKDAFTVVDAI SQKIGLTSYFLKFDEMMKSFLFSSVKPTKLHKPLTRSAAASMAEIDDVDEQDSSDHKNEDHPILSSLFDSHFVNFVKSLEGNIRETIVDVYSRPKSEVAV VPAELELKRGESDKDYIERLKSFVQKQCSEIQNLLGRNATLAENLTKTGGSVSSQPEQRTSGGLDRVQAETLRRDLQEASQRIEMLKAEKAKIESEASMY QNLAGKMESDLKSLSDAYNSLEQANFHLEKEVKALKSGGASTPPDVEAIRAEAREEAQKESEAELNDLLVCLGQEQSRVEKLSARLMELGEDVDKLLEGV GDDMGLPEDSEKEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.003G100600 [exp]	5.47	0.6903
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	6.32	0.6693
AT3G15920			Phox (PX) domain-containing pr...		Potri.001G201900 [exp]	7.74	0.7017
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	9.94	0.7220
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.010G233600 [exp]	10.58	0.6969
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	11.83	0.6600
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.006G144500 [exp]	15.00	0.6702
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.001G059900 [exp]	15.29	0.6398	G6PD.2
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G090200 [exp]	18.33	0.6404
AT1G06590			unknown protein		Potri.004G081200 [exp]	24.91	0.6391

Compare expression of checked genes

Potri.001G343500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.