Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27550 466 / 7e-159 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 124 / 2e-30 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 107 / 3e-25 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 105 / 1e-24 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G23070 80 / 2e-15 ATCFM3A CRM family member 3A (.1) AT3G01370 80 / 3e-15 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G29750 80 / 3e-15 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G18390 77 / 2e-14 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 75 / 8e-14 ATCFM3B CRM family member 3B (.1) AT5G16180 58 / 2e-08 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G176900 [exp] 119 / 2e-28 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 115 / 7e-28 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 110 / 8e-26 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.010G077100 [exp] 85 / 1e-16 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 80 / 4e-15 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.006G148901 [exp] 76 / 5e-15 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.012G056100 [exp] 76 / 6e-14 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 68 / 1e-11 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.014G074400 [exp] 44 / 0.0003 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003667 [exp] 538 / 0 AT3G27550 481 / 9e-165 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10022280 [exp] 520 / 8e-179 AT3G27550 486 / 1e-167 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10009566 [exp] 138 / 4e-35 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10020391 [exp] 135 / 6e-34 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10034313 [exp] 114 / 3e-27 AT2G28480 416 / 4e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10041459 [exp] 112 / 2e-26 AT2G28480 417 / 3e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10040896 [exp] 99 / 4e-22 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10022091 [exp] 85 / 1e-16 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10009031 [exp] 84 / 2e-16 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 84 / 2e-16 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.001G343700.1 pacid=42787841 polypeptide=Potri.001G343700.1.p locus=Potri.001G343700 ID=Potri.001G343700.1.v4.1 annot-version=v4.1 ATGTTTGCTGCTAGGAACCTTCAAAGGAGTTGCTTTAAGACACTCTATTCTCTCCTTCAATCCAGTCCCAAAAGTAATATTGTGTTATTCAAGGATGTTG CTCCAAAACTTGCTTGTTCAAATGATATTCAACCAAGCTTTTCACCGTTGAATTATCCCCACAATGGATGGTGCCGTTCAATGTCTACTTCAAAAGGGAG GAGCATGAGGAGCAAGGTCGAAAGGCGGATGCGTAAAGAGTCTGGTAAAACACTCAGAGAGATTCGGAGAGCGAAGAAATTGAAGAAGAAATTGATGACT GATGAGGAGAGGCTCATTTACAACCTCAAAAGAGCTAAGAAGAAAGTTGCATTGCTCCTACAGAAGCTAAAAAAATATGATCTACCTGAGTTGCCATCCC CATTGCATGATCCTGAGCTCCTGACACCTGAGCAGCTTCAAGCATATAAGAAGATCGGTTTCAGAAATAAAAATTATGTTCCTGTTGGTGTCCGTGGAGT CTTTGGAGGAGTTGTCCAAAATATGCATATGCATTGGAAGTTTCATGAGACTGTGCAAGTAAGCTGTGACAACTTTCCCAAAGAAAAAATCAAGGAAATG GCTACCATGATAGCAAGACTAAGTGGAGGTATTGTGGTAAATGTTCATAACGTGAAGACAATTATCATGTTCAGAGGCAGAAACTATCGCCAACCAAAAG ATTTGATCCCTCTTAACACTCTTACAAAAAGGAAGGCACTGTTTAAGGCTAGGTTTGAGCAAGCTCTTGAATCTCAGAAGCTAAACATCAAGCAAATTGA ACAGCAGCTCCGGCGAATGGGGGTAAACCCTGAGGATCCAGTTGCCATGGCCAGCATTCAGAGAGTAGCTTCCACATTCTTCAATGCTATTGACAAGAAG GAAGGAAGCCCTTATGTCTTTCATGGTGACAAAGGGTCAATGGTGGAGCCCCATGATCATTTAGAACATTTGGAACCCCCTGCTGACGAGAGTGATCAAG AGGAGCTTGATAGGTTTATTGCTGAGATAGAGGATGCAGCAGATCAAGAGTGGGCTGCAGAAGAAGCTGCAGAGAAAGAAGAATTTGGTAGGATTAGATA CTGGAACAGGGAAGATTATGGTGGGCGGATTAGGAGCCCAGAAATACATAGAAGTGAAGTTTCCGATGGTGAGGCAAGAGGAGCCAGGCATTGGAGAGAT GCACGTGACAAACGGATGAGTTCTAATCGAGATGATGATAGTGATGTTTCTGAGGGTGATAATGAGTGGAATGTTAGAGATAATAGTGATCATGAGAGTG ATTTTTATGCAGATCGCAGATCTAGAGGGCTGCGGAGGAAGCAAGATGGGATTGGAAGGGAATATAATGCTCATGATATCAAAAGAAAATTTGAACCTGA ATTCAAAGAAAAGATGGCTGAAGAAGATTCTGAATCAGAAGAAATGTTAAGTGATCTTGACAATGCAATGTGGCAATCAGATGCTGAGGAAGAACATGTC TCAAGAACATCAAGAGCGGAAGCAAGTCCCATCTTTAAAAGCAGCAGTGATGATGAGGAGGATACATATCCCTTGAAGAGAAATGAGATCACCAGGGTAA CGGATCCGCAGAGTGATGCAGCGCGTGACGAGTTTAAAATATCAAGAAGTTTGAAGCAGAAGAATGGAGTTGGTTCTTTCAAGAGAAATGCTGAAGCAAA TTCCAGAAGAAAGACGTTCCAGGAAGATTCTGGGTCAGATGATATGTATAATGATTCAAAACATGCGATGTGGGAATCAGATGATGAGGTAGACATCTTA AGAGCAGGTAGTGAAAAGGATTATAATTACAGGGACAGTGGTGAAAGTGAAGATCACCTCCAGAAGCAACGGGAGAAGCATGAAGCAAATGGTAAGAAGG TGATATCACGAAAAGAGGTGGATGAGACTTGGGACAGTGATTAG
AA sequence Show only first row Show all	>Potri.001G343700.1 pacid=42787841 polypeptide=Potri.001G343700.1.p locus=Potri.001G343700 ID=Potri.001G343700.1.v4.1 annot-version=v4.1 MFAARNLQRSCFKTLYSLLQSSPKSNIVLFKDVAPKLACSNDIQPSFSPLNYPHNGWCRSMSTSKGRSMRSKVERRMRKESGKTLREIRRAKKLKKKLMT DEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPLHDPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVSCDNFPKEKIKEM ATMIARLSGGIVVNVHNVKTIIMFRGRNYRQPKDLIPLNTLTKRKALFKARFEQALESQKLNIKQIEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDKK EGSPYVFHGDKGSMVEPHDHLEHLEPPADESDQEELDRFIAEIEDAADQEWAAEEAAEKEEFGRIRYWNREDYGGRIRSPEIHRSEVSDGEARGARHWRD ARDKRMSSNRDDDSDVSEGDNEWNVRDNSDHESDFYADRRSRGLRRKQDGIGREYNAHDIKRKFEPEFKEKMAEEDSESEEMLSDLDNAMWQSDAEEEHV SRTSRAEASPIFKSSSDDEEDTYPLKRNEITRVTDPQSDAARDEFKISRSLKQKNGVGSFKRNAEANSRRKTFQEDSGSDDMYNDSKHAMWESDDEVDIL RAGSEKDYNYRDSGESEDHLQKQREKHEANGKKVISRKEVDETWDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Potri.001G343700 [exp]	0	1
AT5G16860			Tetratricopeptide repeat (TPR)...		Potri.012G041200 [exp]	1.00	0.9240
AT1G30960			GTP-binding family protein (.1...		Potri.001G160800 [exp]	2.00	0.8973	Pt-ERG.1
AT1G02370			Tetratricopeptide repeat (TPR)...		Potri.002G194400 [exp]	2.44	0.9153
AT3G49890			unknown protein		Potri.001G172500 [exp]	4.89	0.8940
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.003G193600 [exp]	5.00	0.8970
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032400 [exp]	6.63	0.8655
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G133500 [exp]	8.83	0.8118
AT5G09995			unknown protein		Potri.007G081800 [exp]	11.22	0.8535
AT1G16350			Aldolase-type TIM barrel famil...		Potri.010G173600 [exp]	12.48	0.8554	IMPDH.3
AT3G23710		AtTic22-III	translocon at the inner envelo...		Potri.002G236000 [exp]	12.96	0.8883

Compare expression of checked genes

Potri.001G343700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.